Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
186 results • Page
4 of 4
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
249
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 12 hours ago by
GenoMax
142k • written 7 days ago by
Ximena
• 0
0
votes
2
replies
238
views
Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read reverse strand" (flag 32/0x20)
PE
BAM
SAM
flag
paired-end
4 days ago by
kalavattam
▴ 190
1
vote
3
replies
295
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
5 days ago by
Lada
▴ 30
1
vote
0
replies
151
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 4 days ago by
zx8754
11k • written 7 days ago by
Emilie
▴ 10
4
votes
2
replies
246
views
Analysis of intronic reads included scRNA-seq data
single-cell
updated 6 days ago by
Ram
43k • written 7 days ago by
carolofharvest
▴ 40
13
votes
14
replies
825
views
High Malat-1 expression in single cell data
single-cell
updated 3 days ago by
t.montserrat.ayuso
▴ 40 • written 11 days ago by
carolofharvest
▴ 40
1
vote
1
reply
194
views
DSEQ2 analysis
DESEQ2
logfoldchange
updated 6 days ago by
Ram
43k • written 7 days ago by
adi.gershon1
• 0
3
votes
8
replies
619
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 4 days ago by
Chris Dean
▴ 410 • written 8 days ago by
sovrappensiero
▴ 100
3
votes
8
replies
534
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
4 days ago by
Qroid
▴ 40
10
votes
14
replies
675
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 3 days ago by
GenoMax
142k • written 9 days ago by
nicole.kavanagh
• 0
0
votes
0
replies
110
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
updated 8 hours ago by
GenoMax
142k • written 9 days ago by
meck
• 0
1
vote
3
replies
296
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
5 days ago by
Dora
▴ 10
0
votes
2
replies
237
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
3 days ago by
Ahiad Chen Zion
• 0
3
votes
3
replies
237
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
4 days ago by
Adyasha
• 0
1
vote
2
replies
245
views
Downloading full alignments from Pfam
pfam
5 days ago by
bef1
• 0
3
votes
3
replies
419
views
absolute path for symbolic links in Snakefile
Snakemake
updated 1 day ago by
Jesse
▴ 770 • written 21 days ago by
yifangt86
▴ 60
0
votes
4
replies
389
views
Highest variable features in single cell data
single-cell
3 days ago by
carolofharvest
▴ 40
1
vote
2
replies
416
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
2 days ago by
Zeng Hao
▴ 40
1
vote
4
replies
380
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 12 hours ago by
GenoMax
142k • written 23 days ago by
aniigodwinn
• 0
1
vote
0
replies
172
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
1 day ago by
eebloom
▴ 80
0
votes
2
replies
256
views
Help with generating annotation database for dog genome to use in ANNOVAR for variant annotation of dog tumor sequences
ANNOVAR
3 days ago by
sainavyav22
• 0
0
votes
0
replies
180
views
CellPhoneDB results
cellphonedb
cpdb
cell_surface_proteins
updated 4 days ago by
GenoMax
142k • written 11 weeks ago by
piotto
▴ 20
1
vote
4
replies
473
views
cellranger error message
multiplexing
cellranger
updated 16 hours ago by
Max
• 0 • written 12 weeks ago by
Alivia
▴ 10
1
vote
10
replies
862
views
error to run rnammer
phylogenomics
rRNA_extraction
rnammer
updated 5 days ago by
antonio.spl
• 0 • written 4 months ago by
microorganism_001
▴ 30
4
votes
12
replies
4.8k
views
10 follow
How to analyze Infinium Mouse Methylation BeadChip array data?
Methylation
Experience
Illumina
Mouse
updated 1 day ago by
Tawny
▴ 180 • written 3.0 years ago by
julia_geh
▴ 20
2
votes
4
replies
713
views
Count all variants from vcf file
variants
vcf
Count
updated 3 days ago by
Pierre Lindenbaum
161k • written 20 months ago by
t.ali
• 0
0
votes
3
replies
678
views
Pluritest for pluripotency broken
pluripotent
pluritest
cells
stem
updated 1 day ago by
DGTool
• 0 • written 21 months ago by
yassine
• 0
6
votes
6
replies
1.8k
views
agilent human all exon sureselct v7 bed file
exon
human
bed
v7
agilent
all
sureselect
updated 5 days ago by
MiladAD
▴ 10 • written 24 months ago by
soheil
• 0
4
votes
6
replies
1.2k
views
Soft-clipping read ends based on read group
ancient
molecule
at
bam
DNA
RG
ends
clipping
damage
updated 2 days ago by
chenl
▴ 10 • written 2.5 years ago by
Martyna
• 0
10
votes
16
replies
17k
views
7 follow
How Can I Count Snps In My Final Vcf Files
SNP
updated 3 days ago by
Pierre Lindenbaum
161k • written 5.7 years ago by
mostafarafiepour
▴ 180
3
votes
0
replies
1.1k
views
Tool:
Sars-Cov-2 Genome & ACE 2 Exploration
sequence
alignment
SNP
genome
5 days ago by
Ibrahim Tanyalcin
★ 1.2k
2
votes
5
replies
2.5k
views
identifying transgene insertion site in WGS
WGS
insertion site
trangene
de-novo
soap
updated 2 days ago by
Cameron.walker9900
• 0 • written 5.1 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
11
replies
5.5k
views
Truncated Bam Error
R
next-gen
sequencing
software error
updated 5 days ago by
guanghao
• 0 • written 6.1 years ago by
vivekruhela
▴ 20
9
votes
13
replies
4.8k
views
Custom Reference panel creation for data imputation from .vcf files
imputation
reference panel
updated 13 hours ago by
analyst
▴ 50 • written 6.4 years ago by
David_emir
▴ 490
4
votes
6
replies
3.8k
views
How to interpret DEXseq results in therms of significance
DEXseq
RNA-Seq
exon
updated 4 days ago by
Sara
▴ 30 • written 6.7 years ago by
Lila M
★ 1.2k
2
votes
2
replies
2.6k
views
Pindel Segmentation Fault Error
pindel
updated 6 days ago by
Ruqaiya
• 0 • written 10.2 years ago by
Yuelin
▴ 20
186 results • Page
4 of 4
Recent Votes
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
Answer: what is another word for a BLAST "hit"?
Comment: what is another word for a BLAST "hit"?
Comment: what is another word for a BLAST "hit"?
Comment: How can I merge GFF files together to produce a file with gene functions from bo
Comment: Contig assembly task, errors
Comment: Where to get the following bed file?
Recent Locations •
All
India,
5 minutes ago
India,
5 minutes ago
UCLA,
6 minutes ago
Pakistan,
9 minutes ago
Malaysia,
11 minutes ago
United States,
11 minutes ago
Singapore,
13 minutes ago
Recent Awards •
All
Popular Question
to
melissachua90
▴ 70
Popular Question
to
octpus616
▴ 100
Popular Question
to
turcoa1
• 0
Scholar
to
chrchang523
10k
Popular Question
to
Lélé
• 0
Commentator
to
dthorbur
★ 1.9k
Popular Question
to
maria.soler
• 0
Recent Replies
Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
use bcftools merge with --force-samples and then use jvarkit https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ to replace the no-call …
Answer: In IGV is this a heterogeneous mutation or false call?
by
swbarnes2
14k
Since all the reads that show the alternate allele have to be clipped to align there, I'd say those reads are misaligned. I would say that…
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
> Here's a few lines from the head of the raw fastq If your files are actually compressed (as their names suggest) then you should not be …
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
If you added the `\` before the `+` then there is no need for it. It makes it appear that the sequences are not in proper fastq format. Ple…
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
Mensur Dlakic
★ 27k
This seems to be the same unanswered question as before, except that its description is split over two threads. You are now forcing us to r…
Answer: what is another word for a BLAST "hit"?
by
dec986
▴ 380
I'll probably go with "matches" even though it doesn't sound as good as just "hit"
Comment: what is another word for a BLAST "hit"?
by
bk11
★ 2.4k
> hits from BLAST hits sequences
Comment: what is another word for a BLAST "hit"?
by
Pierre Lindenbaum
161k
> is there a synonym for hits from BLAST? alignment
Comment: How are score_weights calculated in this code?
by
Ram
43k
Is this ALL the context you can give us?
Comment: Genome Assembly task + Protein Translation, assignment advice on a question
by
Ram
43k
Where did you copy-paste this from? It looks like an assignment question.
Comment: Contig assembly task, errors
by
rackbersingh
• 0
Hi Phillip, Thanks for sharing you knowledge and funnily enough this really was an amplitude test, but anyways your sharing of knowledge h…
Comment: Can I readmap short reads to rDNA references?
by
GenoMax
142k
If these are short reads and the organisms are related then you are going to have a difficult time classifying the reads.
Comment: extract viral protein of interest from 10k whole viral genomes
by
GenoMax
142k
With a large dataset it is always best to do the search locally (or in the cloud, if you don't have necessary hardware available locally).
Comment: Truncated metadata file report from ENA Portal API
by
Giulia
• 0
Thank you so much for your hint! I'll look into this!
Comment: How to convert Haps file to vcf file?
by
curious
▴ 750
unzip haps then: bin/shapeit \ -convert \ --input-haps {haps_prefix} \ --thread {cpus} \ --output-…
Traffic: 1464 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6