0
votes
0
replies
86
views
0
votes
6
replies
304
views
0
votes
2
replies
175
views
3 days ago by
sainavyav22
•
0
0
votes
1
reply
143
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Cameron.walker9900
•
0
0
votes
8
replies
309
views
3
votes
9
replies
417
views
updated 2 days ago by
Istvan Albert
100k
•
written 3 days ago by
Κοσμάς
•
0
0
votes
0
replies
107
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
maxime.policarpo
▴
200
3
votes
3
replies
191
views
0
votes
0
replies
92
views
0
votes
0
replies
94
views
0
votes
0
replies
197
views
1
vote
3
replies
2.5k
views
updated 3 days ago by
chrchang523
10k
•
written 6.1 years ago by
Ginevra
▴
10
2
votes
3
replies
195
views
3 days ago by
michelafrancesconi9
▴
20
1
vote
5
replies
263
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
marco.barr
▴
80
2
votes
3
replies
318
views
updated 32 minutes ago by
dsull
★
5.8k
•
written 16 days ago by
javanokendo
▴
60
0
votes
1
reply
129
views
0
votes
2
replies
193
views
3
votes
3
replies
217
views
0
votes
1
reply
123
views
0
votes
0
replies
85
views
3
votes
3
replies
716
views
4 days ago by
david.b.rombaut
▴
10
0
votes
0
replies
75
views
76
votes
72
replies
19k
views
19 follow
1 day ago by
Kevin Blighe
87k
0
votes
0
replies
82
views
2
votes
4
replies
261
views
0
votes
0
replies
81
views
4 days ago by
Gerard
•
0
0
votes
0
replies
81
views
4 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
124
views
4 days ago by
Ben_Ensembl
★
2.4k
2
votes
4
replies
294
views
0
votes
1
reply
149
views
0
votes
2
replies
190
views
0
votes
0
replies
73
views
4 days ago by
kl
▴
10
3
votes
5
replies
262
views
updated 4 days ago by
GenoMax
141k
•
written 4 days ago by
ahmad.sajad4541
•
0
0
votes
0
replies
90
views
4 days ago by
Enrique
•
0
3
votes
5
replies
543
views
0
votes
0
replies
72
views
4 days ago by
sativus
▴
20
6
votes
3
replies
179
views
updated 4 days ago by
Carlo Yague
8.7k
•
written 4 days ago by
analyst
▴
30
0
votes
1
reply
174
views
updated 4 days ago by
colindaven
6.4k
•
written 5 days ago by
Ayush
•
0
0
votes
0
replies
81
views
1
vote
5
replies
316
views
2 days ago by
anasjamshed
▴
120
0
votes
0
replies
125
views
updated 4 days ago by
Carlo Yague
8.7k
•
written 4 days ago by
Atul K.
•
0
3
votes
2
replies
271
views
2
votes
5
replies
450
views
0
votes
0
replies
138
views
updated 4 days ago by
Ram
43k
•
written 5 days ago by
sainavyav22
•
0
0
votes
0
replies
138
views
0
votes
0
replies
133
views
0
votes
0
replies
130
views
updated 4 days ago by
Ram
43k
•
written 5 days ago by
carlopecoraro2
★
2.5k
0
votes
4
replies
523
views
0
votes
2
replies
259
views
updated 4 days ago by
Ram
43k
•
written 6 days ago by
Matteo Ungaro
▴
100
Recent Votes
Recent Locations •
All
Germany, just now
United Kingdom, just now
United Kingdom, 1 minute ago
Chile, 4 minutes ago
United States, 5 minutes ago
Belgium, Brussels, 5 minutes ago
Brazil, 6 minutes ago
Recent Awards •
All
Supporter to
Jalil Sharif
▴
80
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Popular Question to
zdiazmar
▴
30
Popular Question to
hkarakurt
▴
180
Recent Replies
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴
10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Comment: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Comment: what is the purpose of indexing the reference genome (Kallisto)
by
i.sudbery
19k
Specifically:
If we want to look up all the places where a 31mer is in a genome without and index, we have to compare that 31 to the first…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
benformatics
3.9k
This is way easier to do solely in R now 10 years later.
library(GenomicFeatures)
library(rtracklayer)
## import GTF…
Answer: what is the purpose of indexing the reference genome (Kallisto)
by
dsull
★
5.8k
I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
Jalil Sharif
▴
80
The updated code in R using rtracklayer for reading a gtf file.
https://github.com/jalilsharif/gtf_utr_fix_r/blob/main/gencode_utr_fix_d…
Comment: Rare Disease Variant Pathway Analysis
by
The_PyPanda
▴
10
Thank you LauferVA,
Your advice has been useful and I now a lot to think about and read.
Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads
by
Antonio R. Franco
★
5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot
by
ATpoint
82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt
by
Joe
21k
If you have the accession numbers can you not use something like `eutils`?
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> Next, I tried using bedtools window
but in your original post you said
> tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴
30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
Thank you for replying Pierre.
I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP
awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> using bcftools
Show us what you tried
Traffic: 2826 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6