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186 results • Page
3 of 4
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Views
Votes
Replies
0
votes
1
reply
217
views
htShinyExample-5.3 - not working
htShiny
Oncoprint
InteractiveComplexHeatmap
updated 1 day ago by
Ram
41k • written 7 days ago by
bioinfo
▴ 60
0
votes
1
reply
215
views
How I add new organism "Beauveria bassiana (strain ARSEF 2860)" in ClueGo plug-in of cytoscape?
cytoscape
updated 23 hours ago by
Scooter
▴ 180 • written 26 days ago by
A
• 0
0
votes
4
replies
213
views
Can you help me to download list of miRNA from a SRA under a bioproject ?
bioproject
mirna
updated 1 day ago by
Nitin Narwade
★ 1.5k • written 1 day ago by
abourrieau
• 0
1
vote
1
reply
212
views
Genetic data QC prior to imputation
imputation
updated 6 days ago by
Raony Guimarães
★ 1.3k • written 6 days ago by
kl
▴ 10
0
votes
2
replies
210
views
how to use pilon
genome
pipelines
assembly
pilon
contig
updated 3 days ago by
Arup Ghosh
3.2k • written 9 days ago by
vasudhapai
• 0
3
votes
3
replies
206
views
How can I adjust Y-axis scale when making relative abundance box plot ?
statistics
box-plot
R
scale_adjustment
logarithm
updated 1 day ago by
Jeremy
▴ 840 • written 1 day ago by
ohtang7
▴ 40
0
votes
2
replies
201
views
RnBeads mean difference vs M-values
Methylation
updated 4 days ago by
Basti
★ 1.9k • written 4 days ago by
a.basitkhan1990
▴ 30
2
votes
3
replies
200
views
Blastn DB issue
cgmlst
blastn
updated 1 day ago by
Philipp Bayer
8.1k • written 2 days ago by
hakhasan
• 0
1
vote
2
replies
200
views
What type of cancer did they study in this paper?
cancer
RNAseq
single-cell
updated 1 day ago by
GenoMax
136k • written 1 day ago by
JACKY
▴ 120
1
vote
1
reply
200
views
How should I run ssgsea analysis ?
functional
TPM
enrichment
gsea
ssgsea
updated 2 days ago by
singh.vijender
▴ 110 • written 3 days ago by
DareDevil
★ 3.3k
3
votes
2
replies
198
views
Moving AF tag to new column in a VCF file
mutect2
vcf
2 days ago by
Christian
▴ 30
1
vote
2
replies
197
views
Problem in installing 'magick' R package
R
installation
package
magick
updated 2 days ago by
DBScan
▴ 210 • written 2 days ago by
applepie
• 0
0
votes
3
replies
194
views
ERROR FILE EXTENSION
Prokka
1 day ago by
syirah4
• 0
0
votes
1
reply
195
views
Chipseq peak calling and peak frequency region
chipseeker
macs2
updated 3 days ago by
Arup Ghosh
3.2k • written 5 days ago by
Mehwish
▴ 10
3
votes
2
replies
192
views
Running STAR on fastq file generated from a RNA-seq experiment
STAR
RNAseq
fastq
files
updated 3 days ago by
Darked89
4.5k • written 3 days ago by
achanda
• 0
1
vote
2
replies
192
views
How can I amend the output of a DIAMOND python script?
Python
Diamond
COG_analysis
1 day ago by
eamaunders
• 0
0
votes
3
replies
189
views
In what case there are RR reads but no LL reads when detect inversions using IGV?
IGV
inversion
updated 21 hours ago by
Istvan Albert
99k • written 1 day ago by
Jingfang
• 0
2
votes
2
replies
188
views
R script in docker
R
Visual_studio_code
Docker
23 hours ago by
mrashad
▴ 70
2
votes
3
replies
186
views
Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 1 day ago by
Basti
★ 1.9k • written 1 day ago by
CTLong
▴ 20
0
votes
1
reply
184
views
multiple condition and time course in RNA-seq
edgeR
RNA-Seq
DESeq2
updated 4 days ago by
i.sudbery
18k • written 5 days ago by
tiancaigg
▴ 30
1
vote
1
reply
183
views
Match variants for allele frequency, LD score, and other features
snp
1 day ago by
Jautis
▴ 520
0
votes
4
replies
182
views
MRI VBM issue
MRI
VBM
ROI
Rhesus
3 days ago by
Ethan Lee
• 0
1
vote
2
replies
182
views
RnBeads which p-value to use
Methylation
RnBeads
updated 4 days ago by
ATpoint
78k • written 4 days ago by
a.basitkhan1990
▴ 30
1
vote
1
reply
181
views
Choose between pvalue & pvalue.adj
volcanoplot
updated 3 days ago by
Istvan Albert
99k • written 3 days ago by
Guitout
• 0
2
votes
1
reply
181
views
How to get unaligned reads and aligned reads into separate files from SAM/BAM?
bam
sam
reads
fastq
updated 2 days ago by
rpolicastro
12k • written 2 days ago by
O.rka
▴ 710
0
votes
2
replies
180
views
Guidance on Crucial Parameters for Bioinformatic Analysis of Metabolomic Data
metabolomic
bioinformatic
updated 13 hours ago by
Kevin Blighe
86k • written 19 hours ago by
Giovana
• 0
0
votes
0
replies
173
views
Tutorial:
Making Tile plots to show Synonymous Non-Synonymous mutation fraction
mutation
ggplotify
geom_tile
ggplot2
6 days ago by
rohitsatyam102
▴ 780
0
votes
3
replies
172
views
calculate nucleotide diversity from whole-genome-sequence data for individual genes
genomics
nucleotide_diversity
vcf
1 day ago by
J
• 0
0
votes
1
reply
171
views
String App in Cytoscape
App
String
cytoscape
updated 23 hours ago by
Scooter
▴ 180 • written 3 days ago by
hellokwmin
• 0
1
vote
1
reply
166
views
Harmony integration PC variance explained
scRNA
integration
harmony
updated 2 days ago by
CTLong
▴ 20 • written 4 days ago by
e.iich
• 0
1
vote
1
reply
166
views
Beginner differential methylation analysis
Methylation
updated 4 days ago by
Basti
★ 1.9k • written 4 days ago by
a.basitkhan1990
▴ 30
0
votes
1
reply
161
views
Combine Geoids
Geoids
NCBI
updated 3 days ago by
ATpoint
78k • written 4 days ago by
anasjamshed
▴ 120
0
votes
1
reply
161
views
Python function to export the annotated records to genbank file using python and biopython
biopython
python
bioinformatic
programming
updated 3 days ago by
barslmn
★ 2.0k • written 3 days ago by
Saurabh
• 0
0
votes
1
reply
160
views
bam or VCF files from GSE75010
bam
file
or
VCF
updated 2 days ago by
ATpoint
78k • written 2 days ago by
ahonya
• 0
0
votes
1
reply
160
views
The difference blastn output when using subject and db options
genome
blastn
mite
annotation
tracker
updated 3 days ago by
GenoMax
136k • written 3 days ago by
praasu
▴ 40
0
votes
1
reply
159
views
How to create a mutation frequency comparison plot?
R
data-visualization
plot
updated 2 days ago by
rpolicastro
12k • written 2 days ago by
saipra003
▴ 10
3
votes
0
replies
156
views
Herald:
The Biostar Herald for Monday, November 27, 2023
herald
3 days ago by
Biostar
2.3k
2
votes
1
reply
155
views
Bedtools intersection
bedtools
bed
intersect
vcf
updated 4 days ago by
Pierre Lindenbaum
158k • written 4 days ago by
rejoeraymond776
▴ 10
2
votes
1
reply
155
views
unicycler error : [Errno 13] Permission denied:
unicycler
updated 3 days ago by
barslmn
★ 2.0k • written 3 days ago by
jiyoung
▴ 20
0
votes
1
reply
149
views
How to check for incorporation of plasmid DNA into human genomic DNA (ChIP-seq)?
plasmid
chipseq
updated 1 day ago by
Nitin Narwade
★ 1.5k • written 1 day ago by
tss243
• 0
0
votes
1
reply
149
views
VCF conservation into Treemix
Treemix
Plink
VCF
updated 2 days ago by
singh.vijender
▴ 110 • written 2 days ago by
reza
▴ 300
0
votes
0
replies
148
views
Bcftools consensus when reference is a deletion
consensus
vcf
2 days ago by
selplat21
▴ 20
0
votes
1
reply
146
views
filtering SAM/BAM to remove hits spanning short combined alignment lengths and low counts
align
bbmap
metagenomics
updated 1 day ago by
Tao
▴ 30 • written 1 day ago by
Bryan
▴ 10
1
vote
1
reply
146
views
Two identical reads in my bam files but with a different in CIGAR are mapped in a different location in IGV
pysam
2 days ago by
ManuelDB
▴ 80
1
vote
1
reply
138
views
Bulk and Single Cell RNA-seq online course
single_cell_RNA-seq
bulk_RNA-seq
online_course
updated 16 hours ago by
swbarnes2
13k • written 21 hours ago by
ire
• 0
0
votes
1
reply
132
views
Where do these snpeff annotation come from?
snpeff
updated 19 hours ago by
Istvan Albert
99k • written 23 hours ago by
curious
▴ 730
0
votes
1
reply
131
views
PAML Troubleshooting Help
PAML
codeml
updated 22 hours ago by
dthorbur
▴ 880 • written 1 day ago by
sebabiokr
▴ 10
0
votes
0
replies
129
views
Job:
Bioinformatican/Data Scientist, Transplant Immunology/Genetics, Medical University of Vienna, Austria
RiskPrediction
NGS
SNP
ExomeSequencing
GeneticRiskScore
1 day ago by
aheinzel
▴ 130
0
votes
0
replies
128
views
Mapping Mouse RNAseq Marker Genes to Reactome Pathways
single-cell
pathways
reactome
RNAseq
gene
1 day ago by
el24
▴ 40
0
votes
0
replies
125
views
Negative F statistics for sex check in plink
plink
check
sex
5 days ago by
kl
▴ 10
186 results • Page
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