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121,937 results • Page
129 of 2439
Sort: Rank
Rank
Views
Votes
Replies
1
vote
1
reply
1.3k
views
Can't download txdbmaker package
ASpli
package
txdbmaker
R
updated 18 months ago by
ATpoint
89k • written 18 months ago by
Grace
• 0
2
votes
3
replies
904
views
P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
statistics
RNA-Seq
p-value
updated 18 months ago by
Ram
45k • written 18 months ago by
Netanel
• 0
0
votes
2
replies
924
views
Using nextflow for performing quality control and trimming of reads
quality
fastqc
nextflow
trimmomatic
updated 18 months ago by
dthorbur
★ 3.1k • written 18 months ago by
nithya
• 0
1
vote
3
replies
821
views
Unable to downlaod files from GEO
GEO
updated 18 months ago by
Basti
★ 2.1k • written 18 months ago by
Aaliya
• 0
1
vote
1
reply
784
views
Getting consensus/assembly from RAD-seq data locus, non-model organism
RAD-seq
updated 18 months ago by
Philipp Bayer
8.9k • written 18 months ago by
Andres
▴ 20
1
vote
1
reply
716
views
WGCNA is not generationg TOMfiles
WGCNA
updated 18 months ago by
LChart
5.1k • written 18 months ago by
Nicolas
• 0
1
vote
3
replies
964
views
CCA with random effects model
CCA
updated 18 months ago by
dariober
15k • written 18 months ago by
leranwangcs
▴ 150
1
vote
1
reply
556
views
Tool for gene function identification
Gene-Function
updated 18 months ago by
Ram
45k • written 18 months ago by
Estevão
▴ 10
1
vote
11
replies
2.5k
views
Removing adapter/primer sequence from reads while keeping flanking regions
trimming
fasta
cutadapt
BBDuk
fastq
18 months ago by
Bryan
▴ 20
0
votes
3
replies
1.1k
views
can't download and use mageck-vispr for R?
mageck-vispr
Rstudio
updated 18 months ago by
ATpoint
89k • written 18 months ago by
Vishal
• 0
2
votes
4
replies
1.3k
views
I am unsure why my files are not being accepted in bedtools jaccard, any tips?
bedtools
18 months ago by
Ronin
▴ 10
2
votes
1
reply
2.2k
views
Merging multiple PLINK files
plink
merging
updated 18 months ago by
Dinmukhamed
▴ 10 • written 2.3 years ago by
Nejla
▴ 20
5
votes
6
replies
1.8k
views
7 follow
Seeking Help with Unexpected MA Plot Output
MAplot
RNAseq
Rstudio
updated 18 months ago by
Istvan Albert
103k • written 18 months ago by
Pumla
• 0
0
votes
0
replies
459
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
18 months ago by
Physalia-courses
★ 2.6k
3
votes
4
replies
1.3k
views
Single cell analysis with "meta".tsv.gz file
Single-cell
18 months ago by
Estevão
▴ 10
4
votes
5
replies
1.3k
views
merging tetraploid vcf files through bcftools
vcf
bcftools
18 months ago by
analyst
▴ 70
0
votes
7
replies
2.0k
views
Use of Kraken output for functional analysis
metagenomics
kraken
shotgun
updated 15 months ago by
alawrence2211
• 0 • written 18 months ago by
Srinka
▴ 20
3
votes
3
replies
928
views
How do I find up-to-date gene symbols for outdated names
names
symbols
gene
17 months ago by
DSmith
• 0
0
votes
5
replies
1.2k
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 18 months ago by
Ram
45k • written 18 months ago by
bioinfo
▴ 160
0
votes
0
replies
386
views
Peptide Toxicity
protein
toxinpred3.0
toxicity
peptide
18 months ago by
Saurabh
• 0
1
vote
2
replies
713
views
What are crucial apps/ scripts for cancer genome/data analysis that can be set up as an web based app?
web
based
cancer
updated 18 months ago by
LauferVA
4.8k • written 18 months ago by
bartek
• 0
1
vote
2
replies
922
views
read length in structural variant calling
nanopore
SV
QC
ONT
variant
17 months ago by
eebloom
▴ 110
1
vote
4
replies
948
views
Removing batch effect using combat-seq
combat-seq
batch-effect
RNA-Seq
updated 13 months ago by
Ram
45k • written 18 months ago by
Netanel
• 0
0
votes
2
replies
662
views
HWE filter of vcf files
snp
vcf.
18 months ago by
Max
• 0
0
votes
0
replies
366
views
Long-read data for Alpha-Thalassemia
thalassemia
nanopore
lonngread
18 months ago by
adarsh
▴ 60
0
votes
7
replies
1.7k
views
Selection criteria for nanobody
Nanobody
updated 18 months ago by
LChart
5.1k • written 18 months ago by
farahnazir2
• 0
0
votes
1
reply
1.5k
views
Drug drug interaction
Drug-drug interaction
updated 18 months ago by
tao001126
• 0 • written 7.5 years ago by
shivangi.agarwal800
▴ 120
0
votes
0
replies
474
views
Conditional analysis, direction of effect is changed after conditioning
GWAS
conditioning
population
analysis
genetics
18 months ago by
AMARU
• 0
1
vote
1
reply
1.1k
views
Cell type classification using an integrated reference
scRNAseq
updated 18 months ago by
bk11
★ 3.1k • written 18 months ago by
kayah
▴ 20
0
votes
2
replies
809
views
Adding Clinvar data source to funcotator
gatk
Clinvar
funcotator
gnomad
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
Mojtaba
• 0
0
votes
0
replies
474
views
rMATS reports zero evenets?
splicing
RNA-Seq
rmats
18 months ago by
PK
▴ 130
1
vote
3
replies
763
views
how to do the repeatability filtering of vcf files?
snp
vcf.
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
Max
• 0
1
vote
5
replies
1.3k
views
Homer giving troubles
homer
HOMER
updated 13 months ago by
Bryan
• 0 • written 18 months ago by
naveedhasan2000
▴ 10
0
votes
0
replies
457
views
How to annotate a bed file using gtf using python
bed-
Coding
gtf
file
18 months ago by
naveedhasan2000
▴ 10
0
votes
2
replies
1.1k
views
trying to do some GSEA in python
python
GSEA
GO
updated 18 months ago by
Wayne
★ 2.1k • written 18 months ago by
aleksk779
• 0
0
votes
0
replies
583
views
Issues while trying to create my own PON (Panel Of Normals) with GATK
vcf
gatk
somatic
genomics
variants
18 months ago by
Samuel
▴ 20
1
vote
2
replies
1.6k
views
ENCODE Hi-C FASTQ files are SINGLE end
fastq
layout
ENCODE
Hi-C
updated 18 months ago by
Yihang
• 0 • written 19 months ago by
hamarillo
▴ 80
4
votes
1
reply
740
views
Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Biological Insight
RNAseq
DESeq2
Dispersionplot
updated 18 months ago by
ATpoint
89k • written 18 months ago by
Pumla
• 0
0
votes
3
replies
1.1k
views
cell type adjustment - how many cell types to include?
celltypes
ewas
updated 18 months ago by
LChart
5.1k • written 18 months ago by
kaybelter
• 0
0
votes
0
replies
633
views
OrthoVenn3 Singletons
venn
singletons
orthovenn
orthofinder
updated 18 months ago by
GenoMax
154k • written 18 months ago by
Lasya
• 0
0
votes
1
reply
673
views
AUC=1, is it possible after lasso regression?
lasso
AUC
updated 18 months ago by
Jeremy Leipzig
23k • written 18 months ago by
Amir
• 0
0
votes
0
replies
563
views
Dante Labs VCF analysis, CHROM column absence UPD: solved!
vcf
coordinate
dante
assembly
chromosome
18 months ago by
k.alincha
• 0
0
votes
0
replies
898
views
I performed Homer's annotatePeaks.pl on multiple tissues, yet when I run annotatePeaks on the merged tissues, I get fewer total annotated peaks. Is t…
Homer
ATACseq
18 months ago by
Ronin
▴ 10
0
votes
5
replies
1.5k
views
How to assure that sequence consensus is genuine?
genome
18 months ago by
marongiu.luigi
▴ 760
0
votes
4
replies
1.2k
views
How evaluate assembly when multiple reference strains are available?
Genome
Quast
Reference
Assembly
updated 18 months ago by
dthorbur
★ 3.1k • written 18 months ago by
MetaPaul
• 0
0
votes
1
reply
649
views
Need help with improving the 16S rRNA sequence quality with trimmomatic?
bioinformatic
Trimmomatic
updated 18 months ago by
jeevii
• 0 • written 18 months ago by
Kai Xin
• 0
2
votes
1
reply
639
views
Forgot the web site with comparison of NGS platforms
NGS
platforms
updated 18 months ago by
cmdcolin
★ 4.3k • written 18 months ago by
konstantinkul
▴ 130
0
votes
1
reply
636
views
How to keep only first part of the name when adding AddOrReplaceReadGroups in multiple BAM files at a time?
SLURM
BASH
GATK
Picard
18 months ago by
kabir.deb
▴ 90
0
votes
7
replies
1.6k
views
Help with summarizeOverlaps function in RNASeq analysis using R
R
RNA-Seq
summarizeOverlaps
GenomicAlignments
updated 17 months ago by
BioinfGuru
★ 2.1k • written 18 months ago by
FJCF
• 0
0
votes
1
reply
909
views
Data table for LOEUF loss-of-function observed/expected upper bound fraction
LOEUF
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
Shicheng Guo
★ 9.6k
121,937 results • Page
129 of 2439
Recent Votes
Answer: Linear regression vs DESeq2 models for DEG analysis
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
A: What'S The Difference Between Cds And Orf?
Answer: Linear regression vs DESeq2 models for DEG analysis
Answer: Linear regression vs DESeq2 models for DEG analysis
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Recent Replies
Comment: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
It is not clear to me that you can meaningfully correct for 5 different batches with two samples a piece.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
154k
> I am not sure if there would be primer dimer sequences I should have said adapter dimers above. Correction made.
Comment: Help understanding this per base sequence content failure fastqc plot
by
lieven.sterck
15k
that 151st base added is a base to ignore (it's a kind of random addition) ... if I recall correctly it's a consequence of the technology. …
Comment: Linear regression vs DESeq2 models for DEG analysis
by
FioG
• 0
@swbarnes2 Thank you for your response! I am new to RNA seq analysis and was originally recommended to use the LM method following cqn and …
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
curious
▴ 890
Thank you, the adapter sequences are specified as CTGTCTCTTATACACATCT+ATGTGTATAAGAGACA is the SampleSheet.csv file from the sequencing run.…
Comment: how to explain the sample size discrepancy in UCSC Xena
by
nuorain
▴ 40
Thank you very much.
Answer: how to explain the sample size discrepancy in UCSC Xena
by
i.sudbery
22k
Because there wasn't RNA-seq analysis performed for every sample in TCGA?
Answer: Linear regression vs DESeq2 models for DEG analysis
by
i.sudbery
22k
There are two main problems with using linear models for read-count based analyses. Firstly, linear models assume a normal distribution…
Comment: real time PCR data analysis
by
ATpoint
89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
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