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121,958 results • Page
173 of 2440
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Votes
Replies
0
votes
7
replies
1.4k
views
error MarkerScanner.pl
amphora2
updated 21 months ago by
Ram
45k • written 21 months ago by
Kárita
• 0
2
votes
6
replies
1.7k
views
Overlapping and merging ChIP-seq peaks
MACS2
HOMER
ChIP-seq
peak-calling
updated 18 months ago by
Ram
45k • written 21 months ago by
zea
▴ 10
0
votes
0
replies
410
views
Chloroplast genome features
chloroplast
genome
features
21 months ago by
Ben
• 0
2
votes
4
replies
1.2k
views
extract variants from 1000 Genome VCF files
bcftools
bed
snp
vcf
21 months ago by
giulia.cosenza
▴ 20
0
votes
0
replies
409
views
Mosaic detection from BAM 30xWGS
BAM
Mosaic
WGS
21 months ago by
Monika
• 0
13
votes
9
replies
7.3k
views
9 follow
What apps can read large FASTQ files on Windows?
fastq
apps
updated 21 months ago by
GenoMax
154k • written 22 months ago by
Sanjukta
• 0
0
votes
1
reply
731
views
Variant missing in WGS sample
NGS
Variant-Calling
WGS
updated 21 months ago by
Ram
45k • written 21 months ago by
adarsh
▴ 60
7
votes
12
replies
2.9k
views
ORA with clusterProfiler
clusterProfiler
ORA
updated 8 months ago by
Pegasus
▴ 130 • written 22 months ago by
san96
▴ 190
4
votes
12
replies
2.6k
views
Snakemake rule error
snakemake
python
updated 21 months ago by
dariober
15k • written 22 months ago by
tjroger86
▴ 10
0
votes
1
reply
598
views
How to filter hmmer output and get needed enzymes
hmmer
pfam
updated 21 months ago by
dthorbur
★ 3.1k • written 21 months ago by
Suzu
• 0
0
votes
1
reply
913
views
GFF Error: overlapping duplicate dispersed_repeat feature in stringtie
stringtie
UCSC
repeatmasker
updated 21 months ago by
Istvan Albert
103k • written 22 months ago by
Aki
▴ 20
4
votes
2
replies
1.3k
views
GFF file from protein or cds and genome assembly fasta files
GFF3
GFF
21 months ago by
resug
▴ 40
12
votes
20
replies
3.6k
views
Help with gatk BaseRecalibrator
GATK
variant-calling
updated 22 months ago by
Ram
45k • written 22 months ago by
Chris
▴ 360
0
votes
1
reply
693
views
Need Help Mapping Probe IDs to Gene Symbols
microarray
updated 22 months ago by
jv
★ 1.9k • written 22 months ago by
maryam.kh
• 0
0
votes
1
reply
974
views
Differing output: vcftools' --weir-fst-pop and R hierfstats package's varcomp.glob()
vcftools
hierfstats
fst
updated 22 months ago by
Ram
45k • written 22 months ago by
S
▴ 10
1
vote
2
replies
665
views
genome assembly
genome
assembly
updated 21 months ago by
dthorbur
★ 3.1k • written 22 months ago by
a.hafez
• 0
4
votes
0
replies
1.0k
views
Herald:
The Biostar Herald for Monday, December 11, 2023
herald
22 months ago by
Biostar
3.6k
1
vote
2
replies
872
views
Autocompleting paths within scripts
nano
vim
bash
remote
vscode
22 months ago by
DanielEB_fisk
▴ 20
0
votes
0
replies
540
views
Calculate Jukes-Cantor, Kimura, Tamura-Nei etc distances from BAM files
Kimura
minimap2
samtools
biopython
pysam
22 months ago by
James G
▴ 10
13
votes
13
replies
23k
views
6 follow
Cluster sub-set analysis using Seurat
seurat
single-cell
updated 22 months ago by
j.gleixner
▴ 30 • written 5.2 years ago by
singcell
▴ 10
5
votes
3
replies
13k
views
How can I control the cluster number in scRNASeq clustering by Seurat package
Seurat
RNA-Seq
single-cell
updated 22 months ago by
Ram
45k • written 6.8 years ago by
wenchuan.xie
▴ 40
1
vote
1
reply
873
views
How to input list into GenomicsDBImport with snakemake?
snakemake
GenomicsDBImport
GATK
VCF
updated 22 months ago by
Ram
45k • written 22 months ago by
ema
▴ 10
1
vote
4
replies
1.4k
views
How to cluster .faa files?
faa
protein
clustering
amino-acids
updated 21 months ago by
Joe
22k • written 22 months ago by
bioinformagician
• 0
4
votes
8
replies
2.1k
views
Renaming fasta files with their headers
Linux
fasta
updated 22 months ago by
Ram
45k • written 22 months ago by
sebabiokr
▴ 10
5
votes
2
replies
1.3k
views
What are the methods to correlate/study metabolomics data to proteomics data?
metabolomics
proteomics
multiomics
updated 22 months ago by
LauferVA
4.8k • written 22 months ago by
WUSCHEL
▴ 860
0
votes
0
replies
533
views
Is there any s/w that can be used to map metabolite results to it's pathway/s?
R
metabolomics
proteomics
Python
22 months ago by
WUSCHEL
▴ 860
2
votes
3
replies
3.1k
views
What's the acceptable threshold in Quality Assessment for Genome Assemblies?
kbase
QUAST
quality-control
genome-assembly
updated 21 months ago by
Ram
45k • written 22 months ago by
JaneZheng0406
• 0
0
votes
2
replies
1.2k
views
Tutorials for Spatial Transcriptomics
ST-Seq
Scanpy
Seurat
21 months ago by
saqlain
▴ 90
0
votes
0
replies
905
views
Tutorial:
download metadata using GEOquery
computational-biology
GEO
metadata
updated 21 months ago by
Ram
45k • written 22 months ago by
Ming Tommy Tang
★ 4.7k
0
votes
0
replies
550
views
Using Metagenome Samples for HNSCC analysis
SRA
DESEQ2
updated 20 months ago by
Ram
45k • written 22 months ago by
Ozymandeus
▴ 30
1
vote
2
replies
1.2k
views
Bowtie 2 alignment
Bowtie2
updated 22 months ago by
Istvan Albert
103k • written 22 months ago by
Elizabeth
▴ 40
2
votes
6
replies
1.8k
views
which statistical test and which package for comapre datasets?
R
statistical-test
updated 21 months ago by
Ram
45k • written 22 months ago by
sata72
• 0
0
votes
5
replies
1.7k
views
Is interleaved Fastq files the same as interlaced fastq
fastq
updated 21 months ago by
Brian Bushnell
20k • written 22 months ago by
RCMC
• 0
10
votes
6
replies
8.4k
views
How to create interval list from reference fasta or dict file?
GATK
updated 22 months ago by
Manuel Sokolov Ravasqueira
▴ 110 • written 4.7 years ago by
MatthewP
★ 1.4k
2
votes
6
replies
1.7k
views
GetPileupSummaries intervals-list with Targeted Sequencing?
GetPileUpSummaries
GATK
Variant-Calling
updated 21 months ago by
Ram
45k • written 22 months ago by
Manuel Sokolov Ravasqueira
▴ 110
0
votes
0
replies
429
views
Test for multiplicative effect in mendelian randomization?
R
mendelian_randomization
GWAS
22 months ago by
clairvoyant
• 0
0
votes
1
reply
877
views
Is GeSeq currently unavailable?
GeSeq
updated 22 months ago by
GenoMax
154k • written 22 months ago by
zy
• 0
0
votes
4
replies
1.6k
views
using RSEM with non Trinity assembly
SPAdes
Trinity
RSEM
updated 22 months ago by
Dunois
★ 2.9k • written 22 months ago by
jen
▴ 10
2
votes
3
replies
4.0k
views
autodock vina on mac
docking
mgltools
virtualbox
updated 22 months ago by
Ram
45k • written 22 months ago by
iamsmor
• 0
1
vote
4
replies
1.1k
views
identifying SNPs from short read sequencing data
Sequencing
21 months ago by
reaset41
• 0
0
votes
0
replies
1.0k
views
Transcript Assembly for Multiple Species Using StringTie and Orthogroup Discovery using OrthoFinder
Species
StringTie
Orthogroups
Transcript
Assembly
22 months ago by
dtnondorf
• 0
0
votes
1
reply
774
views
Java class error message when using BBDuk
rna-seq
bbduk
updated 22 months ago by
GenoMax
154k • written 22 months ago by
milewski
• 0
0
votes
1
reply
800
views
how to run the compare_genomes for comparative analysis
genome
orthofinder
evolution
updated 21 months ago by
dthorbur
★ 3.1k • written 22 months ago by
rj.rezwan
▴ 20
5
votes
9
replies
4.0k
views
7 follow
LCA from BLAST output
lca
blast
updated 21 months ago by
Mathilde Borg Dahl
▴ 10 • written 4.9 years ago by
makrez
▴ 60
0
votes
0
replies
566
views
Infer ancestry for RNA-seq data
plink
admixture
ancestry
updated 22 months ago by
Ram
45k • written 22 months ago by
Matthew Chang
• 0
1
vote
3
replies
1.3k
views
CIGAR and query sequence lengths differ
pysam
samtools
22 months ago by
ManuelDB
▴ 110
1
vote
3
replies
1.3k
views
GO, KEGG, GSEA analysis with ~5 DEGs
GO
KEGG
updated 22 months ago by
Istvan Albert
103k • written 22 months ago by
noodlejackson
▴ 40
5
votes
3
replies
1.7k
views
Rstudio cloud
R
single-cell
22 months ago by
synat.keam
▴ 120
0
votes
0
replies
665
views
Apply BSQR for Targeted Sequencing
GenomicPipelines
GATK
variant-calling
22 months ago by
Manuel Sokolov Ravasqueira
▴ 110
0
votes
1
reply
756
views
WGCNA Dendrogram Branch missing from modules
WGCNA
dendrogram
hdWGCNA
updated 22 months ago by
andres.firrincieli
3.9k • written 22 months ago by
mhale
▴ 40
121,958 results • Page
173 of 2440
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