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121,958 results • Page
174 of 2440
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Votes
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0
votes
2
replies
1.1k
views
bcftools=1.18 not filtering correcting MAF
bcftools
minor-allele-frequency
VCF
21 months ago by
AMARU
• 0
1
vote
1
reply
1.0k
views
How to subtract variants from one VCF file to another?
joint-genotyping
vcf
variant-calling
gatk
updated 22 months ago by
Pierre Lindenbaum
166k • written 22 months ago by
cee28
▴ 30
0
votes
2
replies
1.1k
views
Alternative to Gentrome?
salmon
updated 22 months ago by
cfos4698
★ 1.2k • written 22 months ago by
yee
• 0
0
votes
0
replies
717
views
Trouble generating a dendrogram with colored gene modules using WGCNA for large RNA-seq experiment
WGCNA
Gene-Expression
DESeq2
updated 22 months ago by
Ram
45k • written 22 months ago by
aehall26
• 0
27
votes
8
replies
3.2k
views
6 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics
snps
survey
papers
updated 15 months ago by
Rob
7.1k • written 22 months ago by
Raony Guimarães
★ 1.5k
1
vote
4
replies
2.6k
views
Finding differentially expressed genes between Seurat clusters
Seurat
21 months ago by
Nona
▴ 90
1
vote
0
replies
1.4k
views
JoinLayers function for Seurat Object for annotation with SingleR
Seurat
updated 22 months ago by
Ram
45k • written 22 months ago by
Nona
▴ 90
0
votes
0
replies
1.1k
views
Error: Failed to open /ROH/.log. Try changing the --out parameter.
plink
ROH
22 months ago by
sevda
• 0
1
vote
5
replies
1.3k
views
Normalization of RNA captureSeq data (<20 genes captured)
captureSeq
edgeR
DESeq2
RNA
ERCC
updated 22 months ago by
ATpoint
89k • written 22 months ago by
jips
• 0
1
vote
1
reply
955
views
How to properly mock a (Pysam) read
pysam
updated 22 months ago by
Istvan Albert
103k • written 22 months ago by
ManuelDB
▴ 110
9
votes
15
replies
9.9k
views
Efficient way of calculating the number of mismatches between two sets of sequences please?
alignment
genome
sequence
updated 3.6 years ago by
Ram
45k • written 10.8 years ago by
Aurelie MLB
▴ 360
3
votes
3
replies
1.4k
views
How to avoid missannotated GO terms?
swissprot
GO
enrichment
updated 22 months ago by
Elisabeth Gasteiger
★ 2.4k • written 22 months ago by
Arslan Tariq
▴ 140
4
votes
6
replies
1.4k
views
gatk SelectVariants is giving duplicate allele error while extracting SNPs out of vcf file
SNP
variant-calling
gatk
updated 22 months ago by
Ram
45k • written 22 months ago by
analyst
▴ 70
1
vote
2
replies
928
views
Where to download excel file to include major human disease, prevalence and incidence?
Disease-Burden
updated 21 months ago by
Ram
45k • written 22 months ago by
Shicheng Guo
★ 9.6k
0
votes
0
replies
622
views
Converting txt.gz to PLINK bim
S-LDSC
file
LDSC
format
22 months ago by
X
• 0
2
votes
2
replies
1.1k
views
how to draw the volcano plot for DEGs in a different way
volcano-plot
DEG
updated 21 months ago by
Ram
45k • written 22 months ago by
luckyday1661
▴ 10
0
votes
3
replies
1.2k
views
SQL request from NCBI metadata and stat_analysis tables
SQL
NCBI
BigQuery
22 months ago by
marie.harmel
▴ 10
2
votes
1
reply
1.1k
views
get gene name from rsID
dbSNP
updated 22 months ago by
Ram
45k • written 22 months ago by
a3532321
• 0
2
votes
2
replies
2.1k
views
fgsea leading edge genes
gsea
updated 22 months ago by
Ram
45k • written 4.2 years ago by
charlielonergan
▴ 20
3
votes
4
replies
1.2k
views
how to remove multiple columns from a file in R
r
22 months ago by
Bioinfonext
▴ 480
0
votes
3
replies
972
views
Convert NCBI Downloaded files to ANNOVAR format
ANNOVAR
updated 22 months ago by
Ram
45k • written 22 months ago by
robert
• 0
0
votes
5
replies
1.2k
views
Differential expression using Bowtie2
Transcriptome
Bowtie
Differential-expression
updated 22 months ago by
ATpoint
89k • written 22 months ago by
8d8fc19e
• 0
2
votes
5
replies
2.5k
views
Read count vs Depth
Bedtools
updated 22 months ago by
Brian Bushnell
20k • written 22 months ago by
Mary
• 0
0
votes
0
replies
1.2k
views
use GEOparse to download series supplemental files?
gse
geoparse
python
geoquery
geo
22 months ago by
mk
▴ 310
0
votes
0
replies
545
views
News:
New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST
NCBI
BLAST
22 months ago by
PeterC_NCBI
▴ 520
0
votes
2
replies
790
views
How to perform quality control for sex when there are no variants after thresholding for MAF
sex-check
updated 21 months ago by
Ram
45k • written 22 months ago by
kl
▴ 20
2
votes
7
replies
2.2k
views
Multi-factor designs in DiffBind
Chipseq
Multi-factor
Diffbind
22 months ago by
g.persic1991
▴ 10
1
vote
2
replies
1.2k
views
recommend gene ranking methods when doing GSEA
Gene_rank
GSEA
updated 22 months ago by
rpolicastro
13k • written 22 months ago by
luckyday1661
▴ 10
1
vote
3
replies
1.5k
views
Consensus peaksets in DiffBind - conceptual questinos
DiffBind
updated 22 months ago by
Rory Stark
★ 2.1k • written 22 months ago by
Aspire
▴ 390
2
votes
4
replies
1.1k
views
convert dataframe R
R
updated 21 months ago by
Ram
45k • written 22 months ago by
sata72
• 0
0
votes
3
replies
1.2k
views
Opinion on miRNA pipeline
miRNA
pipeline
updated 22 months ago by
Barry Digby
★ 1.3k • written 22 months ago by
ju_ra
• 0
0
votes
1
reply
799
views
CHIPSEQ Analysis , DiffBind Parameters
DiffBind
ChIP-seq
updated 22 months ago by
Rory Stark
★ 2.1k • written 22 months ago by
RD
▴ 30
1
vote
2
replies
728
views
Does orthofinder allow more than one proteome per species as input ?
comparative-genomics
orthology
21 months ago by
Sara
• 0
0
votes
0
replies
516
views
News:
Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R
Gene-Set-Enrichment-Analysis
GSEA
Bioconductor
updated 21 months ago by
Ram
45k • written 22 months ago by
Physalia-courses
★ 2.6k
1
vote
4
replies
1.1k
views
select unique samples in R
statistics
r
biostatistics
21 months ago by
Bioinfonext
▴ 480
0
votes
2
replies
965
views
how to run GSEA with spesific background
RNA-seq
GSEA
updated 20 months ago by
max.fischer03
• 0 • written 22 months ago by
Chava
• 0
0
votes
0
replies
750
views
Job:
Postdocs in Anaerobic Microbial Consortia – DTU Chemical Engineering
Microbiology
microbiology
Biochemistry
Anaerobic
22 months ago by
info
▴ 80
0
votes
0
replies
477
views
inverse normal p-value combination results giving NaN.
rna-seq
p-value
meta-Analysis
updated 21 months ago by
Ram
45k • written 22 months ago by
sehriban.buyukkilic
▴ 10
0
votes
1
reply
675
views
scRNA data analysis , how to compare pattern in multiple samples
R
scRNA
updated 22 months ago by
Ram
45k • written 22 months ago by
Confused_human
▴ 30
0
votes
1
reply
922
views
absolute running error: Error in if (!is.na(res)) { : the condition has length > 1
R
ABSOLUTE
updated 21 months ago by
Ram
45k • written 22 months ago by
qiuting
▴ 20
0
votes
0
replies
404
views
cosinoRmixedeffect: an R package for mixed-effects cosinor models
interactionmodel
cosinor
mixedeffect
circadian
22 months ago by
Agnia
• 0
3
votes
4
replies
1.5k
views
Where can I get a list of SNPs mapping overlapping genes in humans?
SNPs
updated 22 months ago by
Alex Reynolds
36k • written 22 months ago by
Mr Locuace
▴ 180
2
votes
2
replies
1.1k
views
How to add exon annotations to genome annotation
proteome
genome
BED
annotation
22 months ago by
Simone
▴ 10
0
votes
0
replies
565
views
News:
University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression
singlecell
rnaseq
22 months ago by
mia.nahom
▴ 10
2
votes
3
replies
931
views
Annotation Visualization IGV
igv
alignment
gff
annotation
visualization
updated 22 months ago by
Pierre Lindenbaum
166k • written 22 months ago by
awhale01
• 0
0
votes
6
replies
1.5k
views
Resolving over clustered NGS with Q-scores
NGS
overclustering
phred
Q-score
22 months ago by
sam.himes92
• 0
5
votes
2
replies
1.8k
views
Ambient RNA removal method that generates whole (integer) counts
pseudobulk
soupX
DESeq2
single-cell
22 months ago by
EK
• 0
0
votes
3
replies
1.1k
views
Curated model organism gene functional annotations
Interpro
C.elegans
GO-terms
updated 22 months ago by
manaswwm
▴ 570 • written 22 months ago by
ian.will
▴ 30
2
votes
4
replies
1.5k
views
An issue with gtf file (ballgownrsem)
Ballgown
RNA-seq
GTF
RSEM
22 months ago by
cucindarko51
• 0
1
vote
10
replies
4.7k
views
Scanpy Pearson residual PCA error
python
scRNA
scanpy
PCA
updated 22 months ago by
Maëlick
• 0 • written 3.1 years ago by
Emily
▴ 70
121,958 results • Page
174 of 2440
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