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121,958 results • Page 177 of 2440
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2
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3
replies
4.7k
views
Finding human .vcf files online to download
human findvcf vcf
updated 22 months ago by ★ 4.3k • written 22 months ago by ▴ 10
2
votes
4
replies
1.3k
views
How Can I move the scattered dots more closer into the center of box ?
R Boxplots geom_jitter
22 months ago by ohtang7 ▴ 40
0
votes
2
replies
916
views
How to identify CG, CHG, or CHH from MeDIP data
MethylationStudy CHG CHH CG MeDIP
22 months ago by Tm ★ 1.1k
0
votes
0
replies
512
views
Significance of several BUSCO target IDs for the same gene
target_id sequence-ontology BUSCO duplication
22 months ago by CoLa • 0
12
votes
6
replies
1.8k
views
Problematic fastq files...How can we trust them?
fastq
22 months ago by blackadder ▴ 30
1
vote
3
replies
2.2k
views
An incomprehensible error with R package gggenes
R gggenes visualize
updated 22 months ago by 89k • written 22 months ago by • 0
4
votes
2
replies
3.5k
views
Should I scale all genes in single cell Seurat?
singlecell
22 months ago by synat.keam ▴ 120
0
votes
1
reply
714
views
doubt about usage of megahit
trinity megahit
updated 22 months ago by 103k • written 22 months ago by • 0
0
votes
0
replies
445
views
Osmotic permeability of water transport in aquaporins
permeability Osmotic transport Water
22 months ago by Peerzada ▴ 10
1
vote
1
reply
1.0k
views
DIAMOND tutorial
tutorial DIAMOND
updated 22 months ago by 154k • written 22 months ago by ▴ 20
0
votes
13
replies
3.4k
views
Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cell Ranger.
fixed-RNA-profiling chromium cellranger scFFPE
updated 22 months ago by ▴ 70 • written 23 months ago by ★ 3.1k
1
vote
2
replies
1.0k
views
Guidance on Crucial Parameters for Bioinformatic Analysis of Metabolomic Data
metabolomic bioinformatic
updated 22 months ago by 89k • written 22 months ago by • 0
3
votes
8
replies
4.8k
views
6 follow
WGCNA tutorial docs needed: Horvath Lab site down
WGCNA
updated 22 months ago by 89k • written 22 months ago by ▴ 20
0
votes
1
reply
1.1k
views
Loftee no splice site annotations
Loftee VEP
updated 22 months ago by • 0 • written 3.6 years ago by ▴ 110
1
vote
1
reply
767
views
Bulk and Single Cell RNA-seq online course
single_cell_RNA-seq bulk_RNA-seq online_course
updated 22 months ago by 15k • written 22 months ago by • 0
1
vote
1
reply
1.1k
views
gene set enrichment analysis- by enrichGO
rna-seq GO enrichment
updated 22 months ago by 103k • written 22 months ago by • 0
0
votes
0
replies
701
views
how to download the VCF/MAF files from cBioportal genie site
cBioportal mutation VCF TMB
22 months ago by luckyday1661 ▴ 10
0
votes
1
reply
725
views
How to get multiple protein domain database domain name from id's
annotations blast2go domain domains proteins
updated 22 months ago by 154k • written 22 months ago by • 0
0
votes
0
replies
524
views
Extract nontemplated sequences from a position
search motif nontemplated sequences
19 months ago by Ty • 0
0
votes
1
reply
936
views
Annotate Unplaced Scaffold with Chromosome Information
assembly annotation scaffold Chromosome
updated 22 months ago by ★ 4.3k • written 22 months ago by • 0
0
votes
0
replies
746
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
22 months ago by bioinfo ▴ 160
0
votes
1
reply
1.3k
views
Where do these snpeff annotation come from?
snpeff
updated 22 months ago by 103k • written 22 months ago by ▴ 890
4
votes
4
replies
1.7k
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch-effect
updated 14 months ago by 45k • written 22 months ago by ▴ 140
4
votes
5
replies
4.0k
views
Extracting only soft/hard clipped reads from a bam file
bam reads NGS clipped data_analysis
updated 22 months ago by 166k • written 3.0 years ago by ▴ 30
0
votes
3
replies
1.3k
views
In what case there are RR reads but no LL reads when detect inversions using IGV?
IGV inversion
updated 22 months ago by 103k • written 22 months ago by • 0
4
votes
2
replies
1.2k
views
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
SNP bbtools
updated 22 months ago by ★ 5.0k • written 22 months ago by ▴ 80
0
votes
1
reply
832
views
News: Course: Genome Assembly and Annotation
Biodiversity Genome-Assembly Genome-Annotation Long-reads
updated 22 months ago by 45k • written 22 months ago by ★ 2.6k
0
votes
1
reply
978
views
How I add new organism "Beauveria bassiana (strain ARSEF 2860)" in ClueGo plug-in of cytoscape?
cytoscape
updated 22 months ago by ▴ 310 • written 23 months ago by • 0
0
votes
1
reply
1.7k
views
Gene Ontology enrichment with BINGO and ClueGO
BINGO Cytoscape ClueGO Gene Ontology
updated 22 months ago by ▴ 310 • written 22 months ago by ▴ 20
0
votes
3
replies
1.1k
views
String App in Cytoscape
App String cytoscape
22 months ago by hellokwmin • 0
7
votes
7
replies
2.1k
views
Tools or R / Python packages to perfom ML models
Python machine-learning R transcriptomics
22 months ago by sil_bioinfo ▴ 60
0
votes
1
reply
1.1k
views
Salmon indices differences
salmon RNAseq index refgenie decoy
updated 22 months ago by 89k • written 22 months ago by ▴ 20
3
votes
2
replies
1.5k
views
Mapping quality in `vg giraffe`
vg
22 months ago by Wenhai • 0
0
votes
1
reply
701
views
PAML Troubleshooting Help
PAML codeml
updated 22 months ago by ★ 3.1k • written 22 months ago by ▴ 10
2
votes
4
replies
1.2k
views
Can you help me to download list of miRNA from a SRA under a bioproject ?
bioproject mirna
updated 22 months ago by ★ 1.7k • written 22 months ago by • 0
0
votes
0
replies
581
views
how to calculate intramodular connectivity
WGCNA intramodularConnectivity
22 months ago by hellokwmin • 0
3
votes
2
replies
1.5k
views
R script in docker
R Docker Visual-studio-code
updated 22 months ago by 27k • written 22 months ago by ▴ 80
3
votes
6
replies
3.5k
views
6 follow
calculate nucleotide diversity from whole-genome-sequence data for individual genes
genomics nucleotide_diversity vcf
updated 19 months ago by ▴ 10 • written 22 months ago by ▴ 10
0
votes
3
replies
956
views
ERROR FILE EXTENSION
Prokka
22 months ago by syirah4 • 0
0
votes
1
reply
800
views
filtering SAM/BAM to remove hits spanning short combined alignment lengths and low counts
align bbmap metagenomics
updated 22 months ago by ▴ 40 • written 22 months ago by ▴ 20
1
vote
10
replies
2.2k
views
Where is the index command?
samtools
updated 22 months ago by ★ 1.3k • written 22 months ago by • 0
0
votes
0
replies
799
views
GATK Mutect2 mouse dbSNP vcf files recommendations for mouse whole exome data
mouse GATK Mutect2 dbSNP
22 months ago by luckyday1661 ▴ 10
3
votes
6
replies
1.9k
views
scRNA-seq: Consistent low number of cells and low fraction reads across the samples
scRNA-seq cells mRNA expression gene
updated 22 months ago by ★ 1.9k • written 22 months ago by ▴ 40
0
votes
0
replies
514
views
deeptools k-means clustering
heatmap deeptools chipseq
22 months ago by biology_inform ▴ 60
0
votes
1
reply
770
views
How to check for incorporation of plasmid DNA into human genomic DNA (ChIP-seq)?
plasmid chipseq
updated 22 months ago by ★ 1.7k • written 22 months ago by • 0
5
votes
6
replies
1.6k
views
Generate Read counts from bam file
RNAseq reference_genome Deseq2 read_counts
updated 22 months ago by ▴ 10 • written 22 months ago by ▴ 20
1
vote
2
replies
951
views
What type of cancer did they study in this paper?
cancer RNAseq single-cell
updated 22 months ago by 154k • written 22 months ago by ▴ 200
0
votes
0
replies
1.2k
views
Job: Bioinformatican/Data Scientist, Transplant Immunology/Genetics, Medical University of Vienna, Austria
RiskPrediction NGS SNP ExomeSequencing GeneticRiskScore
22 months ago by aheinzel ▴ 130
6
votes
3
replies
1.4k
views
How can I adjust Y-axis scale when making relative abundance box plot ?
statistics box-plot R scale_adjustment logarithm
updated 22 months ago by ▴ 930 • written 22 months ago by ▴ 40
0
votes
0
replies
612
views
Conumee output as input for Gistic2.0
cnv copy gistic cna conumee
updated 22 months ago by 154k • written 22 months ago by ▴ 20
121,958 results • Page 177 of 2440
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Answer: With 10x Visum HD : How to map the barcode id to the barcode sequence ?
With 10x Visum HD : How to map the barcode id to the barcode sequence ?
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On the DMR tutorial page, they retrieve Human CpG Islands from the UCSC Table Browser. You can do the same thing for Mouse CpG Islands. Hav…
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Likely because the SRA programs are doing database look ups as they retrieve the data where as with `curl` you are simply getting pre-exist…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks by Guilherme • 0
That's a great tool! I wonder why downloading through curl via SRA's ftp is SO MUCH faster than through sra toolkit programs (fastq-dump or…
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> they should align with common sequence at some ends, making one longer consensus sequence. You don't want to simulate reads like this.…
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I believe the pairs will only have common sequence (e.g. the pairs will "overlap") if the insert size is small. the wgsim program has a fla…
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I think it's better to use the original 900 variants. If you have genotype information, you can get the fraction of heterozygous variants t…
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Try to switch to percentage view of this graph. Stacked bar charts with different heights can sometimes be misleading.
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Biochemical changes
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