0
votes
0
replies
678
views
9
votes
7
replies
2.2k
views
updated 22 months ago by
Istvan Albert
103k
•
written 22 months ago by
sehriban.buyukkilic
▴
10
0
votes
0
replies
576
views
22 months ago by
reaset41
•
0
0
votes
4
replies
1.4k
views
1
vote
1
reply
687
views
0
votes
1
reply
590
views
updated 10 months ago by
leandrovb88
•
0
•
written 22 months ago by
jorge.cortes.miranda
•
0
4
votes
7
replies
1.3k
views
2
votes
3
replies
1.1k
views
updated 22 months ago by
Philipp Bayer
8.9k
•
written 22 months ago by
hakhasan
•
0
1
vote
2
replies
1.0k
views
22 months ago by
eam-hmc
•
0
1
vote
2
replies
3.6k
views
1
vote
1
reply
745
views
0
votes
3
replies
1.0k
views
2
votes
2
replies
1.1k
views
updated 22 months ago by
rpolicastro
13k
•
written 22 months ago by
saipra003
▴
20
3
votes
5
replies
2.0k
views
updated 22 months ago by
Rory Stark
★
2.1k
•
written 22 months ago by
RD
▴
30
0
votes
0
replies
476
views
22 months ago by
Richard Fontaine
•
0
4
votes
6
replies
1.9k
views
2
votes
1
reply
1.3k
views
2
votes
2
replies
1.6k
views
3
votes
4
replies
1.8k
views
0
votes
1
reply
817
views
0
votes
0
replies
550
views
2
votes
4
replies
1.3k
views
0
votes
5
replies
1.5k
views
0
votes
2
replies
1.2k
views
1
vote
2
replies
1.2k
views
0
votes
0
replies
530
views
3
votes
2
replies
1.1k
views
1
vote
5
replies
1.3k
views
0
votes
1
reply
689
views
1
vote
8
replies
3.0k
views
0
votes
1
reply
751
views
1
vote
6
replies
1.3k
views
2
votes
1
reply
932
views
2
votes
4
replies
1.5k
views
updated 22 months ago by
Elisabeth Gasteiger
★
2.4k
•
written 22 months ago by
Mery
•
0
0
votes
0
replies
493
views
0
votes
6
replies
1.7k
views
22 months ago by
alice005201314
•
0
1
vote
4
replies
1.1k
views
5
votes
3
replies
3.3k
views
updated 22 months ago by
Brian Bushnell
20k
•
written 22 months ago by
jiyoung
▴
20
0
votes
5
replies
2.0k
views
updated 22 months ago by
Wenhai
•
0
•
written 23 months ago by
javierbelmor
•
0
0
votes
0
replies
469
views
0
votes
3
replies
6.9k
views
0
votes
2
replies
1.1k
views
updated 22 months ago by
rajabolacuan
•
0
•
written 22 months ago by
Camilo Andres
▴
40
0
votes
1
reply
1.2k
views
updated 22 months ago by
Zhenyu Zhang
★
1.3k
•
written 22 months ago by
jomagrax
▴
40
1
vote
0
replies
578
views
0
votes
6
replies
1.5k
views
3
votes
2
replies
1.7k
views
3
votes
3
replies
1.9k
views
updated 22 months ago by
ATpoint
89k
•
written 22 months ago by
r.shiasi3897
▴
10
0
votes
2
replies
833
views
updated 19 months ago by
Ram
45k
•
written 22 months ago by
anasjamshed
▴
140
2
votes
2
replies
1.6k
views
22 months ago by
Enrique
•
0
Recent Votes
Recent Locations •
All
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
Atlantic Veterinary College, University of Prince Edward Island, 2 minutes ago
Germany, 7 minutes ago
United States, 9 minutes ago
Norway, 13 minutes ago
United States, 16 minutes ago
Germany, 19 minutes ago
Recent Awards •
All
Popular Question to
cmdcolin
★
4.3k
Popular Question to
yura.grabovska
▴
820
Popular Question to
Ashwin
▴
70
Popular Question to
sacha
★
2.5k
Popular Question to
Guilherme
•
0
Commentator to
GenoMax
154k
Recent Replies
Comment: Errors with RSEM/bowtie2
by
ofarinas621
•
0
Yes, I already made the transcriptome with these tools, and the CD-HIT-EST fasta file is the transcript file that I am using for RSEM. Then…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
by
Guilherme
•
0
Oh, ok. It seems like NCBI stores the files in SRA format (thus needing conversion and database lookups by sra toolkit tools) and EBI store…
Comment: help with modkit on nanopore sequencing data.
by
andres.firrincieli
3.9k
On the DMR tutorial page, they retrieve Human CpG Islands from the UCSC Table Browser. You can do the same thing for Mouse CpG Islands. Hav…
Comment: After doublet detection in 10x scRNA-Seq data, there is still evidence of double
by
yura.grabovska
▴
820
Yes but the problem is that biological knowledge is never fully encompasing. While I can say that a cell expressing CD45 alongside astrocyt…
Comment: DNA copy number blacklist for excluding common unreliable regions
by
yura.grabovska
▴
820
Human genome, ideally hg38
Comment: Is Newbler still available for download
by
anweshaash
•
0
Hello, I am wondering if you got access to the software or not. I am looking to use Newbler for my research and I contacted Roche too but t…
Comment: Errors with RSEM/bowtie2
by
GenoMax
154k
> I have previously run Trinity with the Trimmomatic step as well as CD-HIT-EST.
I assume you did the above to generate the transcriptome,…
Answer: With 10x Visum HD : How to map the barcode id to the barcode sequence ?
by
sacha
★
2.5k
Got it
https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-inclusion-list-formerly-barcode-whitelist
Comment: limmaFit error when comparing TCGA RNA-Seq data
by
vernonlim98
•
0
Thanks for the advice. Am still new to RNA seq and R programming in general, and will just do the analysis by myself.
Answer: The Biostar Handbook. A bioinformatics e-book for beginners.
by
Istvan Albert
103k
Update as of **August 2025**: The book now includes a new online course: [**FastTrack Bioinformatics 2025**][course] at no extra cost.
Bio…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
by
GenoMax
154k
Likely because the SRA programs are doing database look ups as they retrieve the data where as with `curl` you are simply getting pre-exist…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
by
Guilherme
•
0
That's a great tool! I wonder why downloading through curl via SRA's ftp is SO MUCH faster than through sra toolkit programs (fastq-dump or…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
GenoMax
154k
> they should align with common sequence at some ends, making one longer consensus sequence.
You don't want to simulate reads like this.…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
cmdcolin
★
4.3k
I believe the pairs will only have common sequence (e.g. the pairs will "overlap") if the insert size is small. the wgsim program has a fla…
Answer: X chromosome male and female imputation
by
barslmn
★
2.4k
I think it's better to use the original 900 variants.
If you have genotype information, you can get the fraction of heterozygous variants t…
Traffic: 4992 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6