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Limit : this month
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500 results • Page
2 of 10
Sort: Votes
Rank
Views
Votes
Replies
4
votes
2
replies
242
views
How can I check if a variant affects a TFBS?
variant
TFBS
21 days ago by
Tania
▴ 180
4
votes
6
replies
5.5k
views
Interpreting ASCAT CNV output
genome
ASCAT
CNA
updated 21 days ago by
zizigolu
★ 4.3k • written 6.6 years ago by
philomath_physicus
▴ 10
4
votes
2
replies
355
views
Tool:
A notebook for checking relatedness and X heterozygosity from sequencing data
heterozygosity
relatedness
sequencing
sex
estimation
1 day ago by
barslmn
★ 2.3k
4
votes
2
replies
253
views
Problem in calling peak by MACS3
MACS3
updated 18 days ago by
ATpoint
85k • written 18 days ago by
daffodil
▴ 10
4
votes
3
replies
587
views
Tool:
filterx : fast and efficient filter tool written in Rust for csv,fasta,fastq,gff,vcf,sam files.
csv
fasta
fastq
5 days ago by
dwpeng
▴ 100
4
votes
6
replies
404
views
merging of two assemblies from different short-reads techniques
hybrid
illumina
assembly
DNBSEQ
updated 23 days ago by
GenoMax
147k • written 24 days ago by
Andrew Yu
• 0
4
votes
4
replies
1.6k
views
WGCNA kME vs kWithin Hub Gene Disparities
WGCNA
network
RNAseq
hub
module
updated 19 hours ago by
pkhuang
• 0 • written 10 months ago by
mhale
▴ 40
3
votes
7
replies
568
views
HTSeq-count vs. FeatureCounts: Significant Difference in Results
FeatureCounts
HTseq-count
7 days ago by
Dora
▴ 10
3
votes
5
replies
281
views
Create a fasta and gtf file
gtf
human
genome
fasta
3 hours ago by
Ar
★ 1.1k
3
votes
5
replies
1.5k
views
VCF file generated by Gridss not recognised by VEP
NGS
variant-calling
VEP
Gridss
updated 26 days ago by
Sunnywy0808
• 0 • written 20 months ago by
Reda
• 0
3
votes
2
replies
245
views
Downloading Raw Reads
reads
RNA
updated 16 days ago by
colindaven
6.9k • written 17 days ago by
Jamie
• 0
3
votes
7
replies
430
views
errors in installing picard
picard
17 days ago by
Meghan.T
• 0
3
votes
2
replies
252
views
RNA-seq heatmaps: effective length, RPKM vs. CPM
edgeR
RNA-seq
updated 17 days ago by
ATpoint
85k • written 17 days ago by
bioinfo2345
▴ 40
3
votes
4
replies
385
views
Identifying Runs of Homozygosity and Inbreeding Coefficient from VCF File
SNP
vcf
genomics
updated 14 days ago by
Ram
44k • written 15 days ago by
saamhasan55
▴ 10
3
votes
5
replies
5.3k
views
how to extract the sense and antisene bam files from the single end mapping bam file?
RNA-Seq
updated 16 days ago by
Pierre Lindenbaum
164k • written 9.7 years ago by
wu.zhiqiang.1020
▴ 50
3
votes
5
replies
471
views
Gene set enrichment analysis gives a lot of "significant pathways"
KEGG
GESA
Hallmarks
14 days ago by
Bine
▴ 90
3
votes
1
reply
313
views
How to find the adapter sequence of an RNAseq dataset?
fastQC
trimming
adapter
RNAseq
updated 7 days ago by
GenoMax
147k • written 7 days ago by
Maryam
• 0
3
votes
4
replies
386
views
What is wrong with my scripts?
R
GDC
TCGAbiolinks
Bioconductor
updated 25 days ago by
Ming Tommy Tang
★ 4.5k • written 25 days ago by
nuorain
▴ 30
3
votes
4
replies
4.2k
views
Cellcyclescoring did not work in Seurat V5
Seurat
single-cell
updated 3 days ago by
Bastien Hervé
5.8k • written 11 months ago by
synat.keam
▴ 100
3
votes
3
replies
278
views
DeNovo Assembly - Assigning gene description
braker2
DeNovo-Assembly
masurca
WGS
updated 10 days ago by
Ram
44k • written 11 days ago by
Sowmya Pulapet
▴ 70
3
votes
2
replies
306
views
cnv_facets run problem
R
cnv_facets
24 days ago by
hamideh
▴ 20
3
votes
10
replies
567
views
Genome Assembly Verification, Chimeric contigs
flye
genome
assembly
fungus
updated 14 days ago by
alex.zaccaron
▴ 470 • written 16 days ago by
Umer
▴ 130
3
votes
9
replies
803
views
I need help with this R script. Thanks.
R
updated 25 days ago by
Ram
44k • written 28 days ago by
nuorain
▴ 30
3
votes
10
replies
668
views
Tool:
fastplong: ultrafast preprocessing and quality control for long reads
long-reads
updated 14 days ago by
lieven.sterck
15k • written 18 days ago by
chen
★ 2.5k
3
votes
5
replies
556
views
why do I get this error while reading single cell RNA seq data in R
scRNA-seq
18 days ago by
nuorain
▴ 30
3
votes
6
replies
463
views
PCA for count data
PCA
24 days ago by
QX
▴ 60
3
votes
3
replies
421
views
How to make DiffBind Run Faster?
DiffBind
ATAC-seq
updated 21 days ago by
jared.andrews07
★ 18k • written 28 days ago by
B.N.
▴ 10
3
votes
3
replies
414
views
alignment to human transcriptome with Bowtie2
alignment
updated 11 days ago by
swbarnes2
14k • written 15 days ago by
Meghan.T
• 0
3
votes
3
replies
351
views
IDAT to FASTA workflow
PLINK
R
IDAT
FASTA
GWAS
updated 9 days ago by
GenoMax
147k • written 9 days ago by
sabrilo171
▴ 10
3
votes
2
replies
246
views
Tool:
Any Paper: Ultra-fast QA and literature search based on Pubmed papers.
Literature-Search
AI
2 days ago by
Alan Liu
▴ 30
3
votes
2
replies
299
views
Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
FASTA
Genome
NCBI
updated 20 days ago by
shenwei356
8.7k • written 20 days ago by
Mark
▴ 10
3
votes
0
replies
163
views
Blog:
How Seurat PCA projection, KNN and MNN for label transfer work
R
RNA-seq
scRNA-seq
PCA
updated 18 days ago by
Ram
44k • written 19 days ago by
Ming Tommy Tang
★ 4.5k
3
votes
1
reply
196
views
Creating pathogen test database from nt NCBI
Blast
NCBI
Metagenomics
updated 4 days ago by
GenoMax
147k • written 4 days ago by
r.d.jongh
▴ 20
2
votes
6
replies
1.3k
views
Mapping all 32-mers within Hamming Distance = 3
hamming
alignment
kmer
ngs
short
updated 29 days ago by
mourisl
▴ 30 • written 23 months ago by
giova34
▴ 10
2
votes
1
reply
266
views
Best protein imputation method when comparing knock-outs?
imputation
proteomics
mass-spectrometry
MS
LFQ
updated 15 days ago by
KABILAN
▴ 100 • written 16 days ago by
sebastian.gregoricchio
▴ 30
2
votes
8
replies
482
views
GEOquery issue
database
GEO
GEOquery
18 days ago by
Jaber
▴ 30
2
votes
1
reply
332
views
GWAS from direct samples... is imputation necessary?
imputation
PLINK
GWAS
updated 5 days ago by
LChart
4.4k • written 9 days ago by
sabrilo171
▴ 10
2
votes
7
replies
414
views
Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes
RNASeq
updated 2 days ago by
i.sudbery
20k • written 4 days ago by
brayas13
• 0
2
votes
6
replies
433
views
Problem with mapping rate while using Mageck to process CRISPR screen data
crispr
screen
CRISPR-screen
mageck
mapping
updated 18 days ago by
ATpoint
85k • written 23 days ago by
Luwell
• 0
2
votes
2
replies
249
views
Highly skewed distribution of differentially expressed (DE) genes
R
RNAseq
Deseq2
updated 17 days ago by
LChart
4.4k • written 17 days ago by
Maria
• 0
2
votes
4
replies
327
views
coordinate vs contributions for the variables in PCA using FactoMineR
PCA
updated 16 days ago by
Bastien Hervé
5.8k • written 16 days ago by
QX
▴ 60
2
votes
6
replies
2.5k
views
Question: can not obtain DESeq2 results
RNA-Seq
DESeq2
updated 9 days ago by
Jack
▴ 10 • written 4.3 years ago by
zjxia
▴ 10
2
votes
2
replies
251
views
Cell cluster that mainly consists of doublet.
Doublet
scRNA-seq
updated 21 days ago by
jared.andrews07
★ 18k • written 21 days ago by
D
• 0
2
votes
4
replies
260
views
Contrasts for comparing condition within tissue
limma
deseq2
edgeR
contrasts
updated 11 hours ago by
SamGG
▴ 60 • written 1 day ago by
Ben
▴ 20
2
votes
1
reply
198
views
variant calling through gatk
variant-calling
vcf
workflow
gatk
14 days ago by
ashaneev07
▴ 40
2
votes
6
replies
1.3k
views
Matchless comparison between Roary and Prokka: missing genes in "gene_presence_abscence.csv"
id
roary
gene
prokka
updated 10 days ago by
erindarruci16
▴ 10 • written 2.4 years ago by
greed
▴ 10
2
votes
3
replies
816
views
RPKM normalization
RNASeq
RPKM
updated 11 days ago by
Carlo Yague
8.9k • written 18 months ago by
prs
▴ 20
2
votes
7
replies
803
views
How to scrap PlasmoDB website
plasmoDB
rvest
tidyr
28 days ago by
rohitsatyam102
▴ 910
2
votes
2
replies
283
views
Using RepeatModeller and RepeatMasker for Multiple Gastropod Genomes: Is a Single Repeat Library Sufficient?
genome-annotation
RepeatModeller
RepeatMasker
updated 9 days ago by
Mensur Dlakic
★ 28k • written 10 days ago by
Rohan
▴ 20
2
votes
7
replies
659
views
Can someone explain to me in relatively simple language how PCR primer, reverse primer, and probe sequences are generated?
reverse
probe
pcr
primer
15 days ago by
Ryan
• 0
500 results • Page
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Thanks for your response. I was able to fix this by first making the UMAP for the snRNAseq assay. I re-ran FindNeighbors and then re-ran Fi…
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I didn't know I'm sorry, I think I fixed it
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Here am I, found your post 9 years later, and I'm with the same question... did you find it out?
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Thank you! This is very helpful.
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