1
vote
2
replies
271
views
1
vote
3
replies
258
views
0
votes
2
replies
209
views
0
votes
0
replies
153
views
0
votes
1
reply
168
views
updated 1 day ago by
Adam
▴
30
•
written 2 days ago by
Ahiad Chen Zion
•
0
0
votes
4
replies
254
views
0
votes
0
replies
121
views
0
votes
0
replies
120
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
116
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
Alexandros
•
0
0
votes
1
reply
157
views
0
votes
3
replies
261
views
4
votes
6
replies
3.8k
views
updated 2 days ago by
Andres
▴
20
•
written 9.6 years ago by
hermathena
▴
40
0
votes
0
replies
123
views
0
votes
1
reply
272
views
0
votes
0
replies
123
views
0
votes
1
reply
175
views
updated 2 days ago by
Jack Tierney
▴
360
•
written 2 days ago by
Sudip
•
0
1
vote
1
reply
207
views
updated 2 days ago by
Michael
54k
•
written 3 days ago by
Lissa Cruz Saavedra
•
0
5
votes
3
replies
251
views
6 follow
updated 2 days ago by
Lluís R.
★
1.2k
•
written 2 days ago by
이민경[학생](대학원 융합의과학과)
•
0
2
votes
2
replies
183
views
1
vote
2
replies
212
views
0
votes
0
replies
106
views
0
votes
0
replies
110
views
0
votes
0
replies
125
views
3 days ago by
Jacob
•
0
0
votes
3
replies
730
views
0
votes
4
replies
252
views
0
votes
1
reply
176
views
0
votes
3
replies
267
views
3
votes
2
replies
364
views
3
votes
3
replies
310
views
0
votes
1
reply
161
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Petchimuthu
•
0
3
votes
7
replies
317
views
0
votes
0
replies
120
views
3 days ago by
Lluís R.
★
1.2k
4
votes
7
replies
571
views
3 days ago by
e.r.zakiev
▴
210
0
votes
0
replies
121
views
0
votes
4
replies
236
views
0
votes
5
replies
401
views
0
votes
0
replies
217
views
0
votes
3
replies
209
views
0
votes
0
replies
92
views
4
votes
5
replies
283
views
0
votes
2
replies
197
views
3 days ago by
Bosberg
▴
50
4
votes
0
replies
129
views
0
votes
1
reply
131
views
0
votes
1
reply
271
views
0
votes
0
replies
87
views
1
vote
4
replies
382
views
3 days ago by
hagl
▴
10
0
votes
4
replies
238
views
0
votes
2
replies
150
views
0
votes
1
reply
140
views
Recent Votes
Recent Locations •
All
United States, just now
Whitefish, MT, 5 minutes ago
Mexico, 8 minutes ago
United States, 10 minutes ago
Canada, 11 minutes ago
Australia, 20 minutes ago
United States, 22 minutes ago
Recent Awards •
All
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
Sasha
▴
840
Popular Question to
Buffo
★
2.4k
Popular Question to
yvonnehhe
•
0
Popular Question to
curious
▴
750
Scholar to
jared.andrews07
★
16k
Popular Question to
hafiz.talhamalik
▴
350
Recent Replies
Comment: Post-imputation plot
by
LChart
3.9k
Imputation takes what? A day or two of compute time? Just re-do it.
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Thanks. Really appreciate your help with this. This site is such a great resource.
The methods aren't totally clear on how they're gettin…
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
It is possible that these drugs may not have been directly used in TCGA. Authors could have looked for mutations known to be acted on by th…
Comment: Does comparing two different groups to a common third group introduce bias in th
by
Qroid
▴
40
Are you thinking about a specific scenario? If so, can you provide more info? I think the basic answer is that, yes, your choice of group C…
Answer: Bedtools merge minimum overlap?
by
harold.smith.tarheel
★
4.9k
Bedtools [intersect][1] allows you to specify the fraction of overlap between two BED (or BAM) files using the F/f/r flags. You could split…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Sorry, I should have been more specific. By "that list" I mean what's populated in the Therapeutic Agents tab when no filters are applied. …
Comment: Bedtools merge minimum overlap?
by
bk11
★
2.4k
Not sure if you wanting to do like this-
cat your_input.bed
chr1 100 200 region1 +
chr1 180 300 regi…
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
If you know what the boundaries of your construct look like then trim the left-end of the read using the tag on that end (`ktrim=l`). Then …
Comment: Extract gRNA sequence using cutadapt
by
gernophil
▴
80
> Not every read in your data is going to match a guide.
That is also true for sure. Let me clarify what I mean. For every read you should…
Answer: VG : No reference-sense paths available in the graph; falling back to generic pa
by
anovak
▴
120
If your GFA has paths in it that are P lines with names that don't include a sample name, contig name, and separators, then those are what …
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
> if you look at a fastq file you should be able to tell for every read definitely, if it has a perfect match for a guide in it and what gu…
Answer: DiffBind: no peaks in DBA
by
jared.andrews07
★
16k
Because `dba.analyze` is not meant to be run directly on a peaks file. Have you read the documentation?
In addition, a ChIP-seq experiment…
Comment: Extract gRNA sequence using cutadapt
by
gernophil
▴
80
> I don't think every guide is supposed to show up in these experiments as far as I have seen. You will get some guides with 0 counts as yo…
Comment: Converting CRAM to FastQ
by
GenoMax
142k
Use `samtools view ` for this conversion. See discussion in https://www.biostars.org/p/9592860/
Specifically @jkbonfield's comment here --…
Traffic: 1897 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6