updated 2.2 years ago by
cfos4698
★
1.2k
•
written 2.2 years ago by
saamhasan55
▴
30
0
votes
1
reply
866
views
0
votes
0
replies
455
views
0
votes
2
replies
1.7k
views
152
votes
33
replies
153k
views
27 follow
updated 12 months ago by
Ram
45k
•
written 13.6 years ago by
Anima Mundi
★
2.9k
0
votes
3
replies
1.2k
views
0
votes
0
replies
536
views
3
votes
4
replies
3.5k
views
updated 2.2 years ago by
jared.andrews07
★
19k
•
written 2.2 years ago by
Chris
▴
360
0
votes
0
replies
510
views
1
vote
6
replies
1.4k
views
1
vote
2
replies
914
views
2.2 years ago by
m.esmaeilpour
▴
10
6
votes
12
replies
14k
views
3
votes
7
replies
3.4k
views
0
votes
0
replies
579
views
updated 2.2 years ago by
Ram
45k
•
written 2.2 years ago by
mariakondili13
▴
30
0
votes
0
replies
472
views
2.2 years ago by
Evan
•
0
1
vote
2
replies
848
views
2.2 years ago by
dzisis1986
▴
70
0
votes
8
replies
7.0k
views
updated 14 months ago by
Ankur
•
0
•
written 5.0 years ago by
Bioinfonext
▴
480
0
votes
1
reply
743
views
0
votes
0
replies
642
views
2.2 years ago by
kirankumareripogu
▴
10
0
votes
1
reply
761
views
updated 15 months ago by
betsy.s.collins
▴
130
•
written 2.2 years ago by
mariana.ferrera
▴
10
1
vote
3
replies
2.7k
views
0
votes
2
replies
860
views
4
votes
4
replies
1.3k
views
1
vote
2
replies
2.3k
views
10
votes
10
replies
3.4k
views
updated 2.2 years ago by
GenoMax
154k
•
written 2.2 years ago by
ThePresident
▴
190
1
vote
1
reply
3.0k
views
0
votes
0
replies
618
views
0
votes
0
replies
413
views
0
votes
0
replies
874
views
1
vote
1
reply
1.0k
views
updated 18 months ago by
Ram
45k
•
written 2.2 years ago by
josh.mannheimer
•
0
2
votes
4
replies
1.3k
views
0
votes
1
reply
1.3k
views
0
votes
0
replies
652
views
2
votes
1
reply
855
views
1
vote
0
replies
1.4k
views
updated 2.2 years ago by
Ram
45k
•
written 2.2 years ago by
UCSDBioSci
▴
30
6
votes
2
replies
1.8k
views
0
votes
2
replies
859
views
0
votes
2
replies
989
views
2.2 years ago by
davidmaimoun
▴
50
0
votes
0
replies
562
views
2
votes
5
replies
2.2k
views
updated 2.2 years ago by
GenoMax
154k
•
written 2.2 years ago by
sumitra.20
•
0
0
votes
3
replies
1.3k
views
updated 2.2 years ago by
Ram
45k
•
written 2.2 years ago by
imaparna27
▴
20
1
vote
8
replies
6.1k
views
0
votes
0
replies
556
views
2.2 years ago by
Sara
▴
40
2
votes
2
replies
722
views
0
votes
1
reply
780
views
0
votes
1
reply
637
views
updated 2.2 years ago by
Pierre Lindenbaum
166k
•
written 2.2 years ago by
vusichj
•
0
1
vote
2
replies
18k
views
0
votes
11
replies
2.6k
views
0
votes
3
replies
1.6k
views
updated 2.2 years ago by
Pierre Lindenbaum
166k
•
written 2.2 years ago by
Nannapat
•
0
2
votes
2
replies
917
views
updated 2.2 years ago by
GenoMax
154k
•
written 2.2 years ago by
harry.smith
•
0
1
vote
6
replies
3.4k
views
Recent Votes
Recent Locations •
All
USA, 3 minutes ago
India, 28 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Singapore, 1 hour ago
Indonesia, 1 hour ago
United States, 1 hour ago
Recent Awards •
All
Popular Question to
vernonlim98
•
0
Popular Question to
DdogBoss
▴
20
Popular Question to
aj123
▴
130
Popular Question to
LuciaNhu
▴
10
Popular Question to
marongiu.luigi
▴
760
Popular Question to
itparanoia
•
0
Recent Replies
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
GenoMax
154k
So should your command not be (assuming these are the right files) ?
$ gff3-to-tbl .../pharokka.gff .../Annotation/pharokka_cds_final…
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
marongiu.luigi
▴
760
ADDENDUM: I have seen that pharokka already provides a tbl file; anyway, the question remains: if I needed to convert a gff to sequin with …
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
marongiu.luigi
▴
760
Thank you, I have updated the title as suggested. But in the command, there a gff, a tsv, and a protein fasta. The list of files is:
```
$ …
Answer: How to convert gff to Sequin format?
by
GenoMax
154k
> $ gff3-to-tbl .../pharokka.gff .../Annotation/pharokka_cds_final_merged_output.tsv .../Consensus/reference.fasta .../Annotation/phanotate…
Comment: Errors with RSEM/bowtie2
by
GenoMax
154k
> Could this be an issue caused by the sequencing facility or just that they are in fact out of sync?
We have no way to know. Did the sequ…
Comment: Differences between published differential gene expression results and own analy
by
vernonlim98
•
0
Have included the links to the papers I mentioned in another comment for reference!
Comment: Differences between published differential gene expression results and own analy
by
vernonlim98
•
0
These are the 2 papers I mentioned previously that used data other than raw counts for their analysis: https://onlinelibrary.wiley.com/doi/…
Comment: Collect COV file by BedCoverage
by
eshrakaali_p
•
0
Hello German , I am using clinCNV for WES and i faced the same error and this part of the error
[1] "ERROR: your file with normal cove…
Comment: How to create a consensus of a contig with samtools or bbmap?
by
marongiu.luigi
▴
760
sorry, I have mistaken samtools with spades... running `samtools view -h...` did the trick. Thank you.
Comment: Help with Ideathon
by
V K
•
0
Thank you for the response! Unfortunately this is completely independent and not part of a course. I was asking for some innovative ways to…
Answer: How to create a consensus of a contig with samtools or bbmap?
by
lieven.sterck
16k
You assembled a genome using samtools ???? that sounds very weird, if not impossible ...
The header (SQ lines) is missing from your file b…
Answer: gnomad par region variants
by
benformatics
4.2k
The XX and XY counts are present on any given variants page.
Comment: Help with Ideathon
by
Mensur Dlakic
★
30k
I don't see a single question here. Saying `I need your expert help in figuring out how I can make this analysis useful!` is too open-ended…
Comment: Differences between published differential gene expression results and own analy
by
ATpoint
89k
Please link the paper, lets see their methods. With human data it can well be that they included something like surrogate variables to damp…
Comment: Differences between published differential gene expression results and own analy
by
dsull
★
7.7k
There are many ways to do normalization and one of the correct ways is simply to plug raw counts into deseq2 (the math that deseq2 uses to …
Traffic: 3371 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6