updated 22 months ago by
Ram
45k
•
written 2.2 years ago by
Manuel Sokolov Ravasqueira
▴
110
7
votes
5
replies
2.0k
views
1
vote
3
replies
1.1k
views
0
votes
0
replies
558
views
1
vote
4
replies
1.6k
views
2.2 years ago by
sbissi102
▴
10
0
votes
3
replies
1.3k
views
1
vote
0
replies
1.2k
views
updated 2.2 years ago by
Ram
45k
•
written 2.2 years ago by
Manuel Sokolov Ravasqueira
▴
110
0
votes
0
replies
639
views
updated 15 months ago by
Ram
45k
•
written 2.2 years ago by
hashim.rana11
▴
40
0
votes
2
replies
1.1k
views
2
votes
1
reply
1.1k
views
0
votes
0
replies
703
views
0
votes
4
replies
1.3k
views
updated 2.2 years ago by
rfran010
★
1.6k
•
written 2.2 years ago by
singhankit973
▴
20
0
votes
1
reply
800
views
updated 2.2 years ago by
Ram
45k
•
written 2.2 years ago by
chorong5155
•
0
3
votes
1
reply
1.1k
views
1
vote
1
reply
1.4k
views
1
vote
6
replies
2.0k
views
2.2 years ago by
dzisis1986
▴
70
3
votes
4
replies
1.4k
views
5
votes
6
replies
1.9k
views
0
votes
0
replies
1.2k
views
0
votes
0
replies
576
views
4
votes
14
replies
3.6k
views
1
vote
4
replies
1.4k
views
10
votes
4
replies
1.8k
views
7
votes
4
replies
1.6k
views
38
votes
7
replies
3.7k
views
0
votes
2
replies
850
views
2.2 years ago by
josh.mannheimer
•
0
11
votes
21
replies
8.3k
views
9
votes
4
replies
3.6k
views
7 follow
5
votes
5
replies
1.7k
views
updated 2.2 years ago by
ATpoint
89k
•
written 2.2 years ago by
anasjamshed
▴
140
19
votes
5
replies
3.1k
views
updated 2.2 years ago by
Maxime Garcia
▴
410
•
written 2.2 years ago by
Joe
▴
40
0
votes
1
reply
1.0k
views
2
votes
15
replies
3.4k
views
updated 4 months ago by
eebloom
▴
110
•
written 2.2 years ago by
The_PyPanda
▴
10
0
votes
0
replies
793
views
0
votes
2
replies
919
views
3
votes
6
replies
2.7k
views
2.2 years ago by
bade279
•
0
2
votes
6
replies
1.4k
views
updated 2.2 years ago by
GenoMax
154k
•
written 2.2 years ago by
Marco Pannone
▴
810
1
vote
2
replies
1.3k
views
2.0 years ago by
Miao Zhang
•
0
2
votes
2
replies
1.0k
views
2.2 years ago by
bertb
▴
20
3
votes
4
replies
11k
views
updated 2.2 years ago by
jared.andrews07
★
19k
•
written 2.2 years ago by
Chris
▴
360
1
vote
5
replies
1.9k
views
2.2 years ago by
dylannicoembros
•
0
0
votes
2
replies
885
views
2.2 years ago by
sumitra.20
•
0
0
votes
1
reply
1.7k
views
updated 2.2 years ago by
Basti
★
2.1k
•
written 2.2 years ago by
Manuel Sokolov Ravasqueira
▴
110
0
votes
2
replies
738
views
2.2 years ago by
majd.abdulghani
▴
20
16
votes
10
replies
2.3k
views
6 follow
1
vote
2
replies
1.1k
views
7
votes
6
replies
4.9k
views
7 follow
updated 2.2 years ago by
liux.bio
▴
370
•
written 9.0 years ago by
dazhudou1122
▴
140
1
vote
4
replies
1.9k
views
0
votes
0
replies
846
views
2
votes
5
replies
1.5k
views
0
votes
0
replies
508
views
Recent Votes
Recent Locations •
All
United States, 9 minutes ago
USA, 14 minutes ago
UCLA, 21 minutes ago
United States, 31 minutes ago
United States, 45 minutes ago
Perth, Australia, 46 minutes ago
United States, 48 minutes ago
Recent Awards •
All
Popular Question to
DdogBoss
▴
20
Popular Question to
aj123
▴
130
Popular Question to
LuciaNhu
▴
10
Popular Question to
marongiu.luigi
▴
760
Popular Question to
itparanoia
•
0
Popular Question to
arshad1292
▴
110
Recent Replies
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
GenoMax
154k
So should your command not be (assuming these are the right files) ?
$ gff3-to-tbl .../pharokka.gff .../Annotation/pharokka_cds_final…
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
marongiu.luigi
▴
760
ADDENDUM: I have seen that pharokka already provides a tbl file; anyway, the question remains: if I needed to convert a gff to sequin with …
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
marongiu.luigi
▴
760
Thank you, I have updated the title as suggested. But in the command, there a gff, a tsv, and a protein fasta. The list of files is:
```
$ …
Answer: How to convert gff to Sequin format?
by
GenoMax
154k
> $ gff3-to-tbl .../pharokka.gff .../Annotation/pharokka_cds_final_merged_output.tsv .../Consensus/reference.fasta .../Annotation/phanotate…
Comment: Errors with RSEM/bowtie2
by
GenoMax
154k
> Could this be an issue caused by the sequencing facility or just that they are in fact out of sync?
We have no way to know. Did the sequ…
Comment: Differences between published differential gene expression results and own analy
by
vernonlim98
•
0
Have included the links to the papers I mentioned in another comment for reference!
Comment: Differences between published differential gene expression results and own analy
by
vernonlim98
•
0
These are the 2 papers I mentioned previously that used data other than raw counts for their analysis: https://onlinelibrary.wiley.com/doi/…
Comment: Collect COV file by BedCoverage
by
eshrakaali_p
•
0
Hello German , I am using clinCNV for WES and i faced the same error and this part of the error
[1] "ERROR: your file with normal cove…
Comment: How to create a consensus of a contig with samtools or bbmap?
by
marongiu.luigi
▴
760
sorry, I have mistaken samtools with spades... running `samtools view -h...` did the trick. Thank you.
Comment: Help with Ideathon
by
V K
•
0
Thank you for the response! Unfortunately this is completely independent and not part of a course. I was asking for some innovative ways to…
Answer: How to create a consensus of a contig with samtools or bbmap?
by
lieven.sterck
16k
You assembled a genome using samtools ???? that sounds very weird, if not impossible ...
The header (SQ lines) is missing from your file b…
Answer: gnomad par region variants
by
benformatics
4.2k
The XX and XY counts are present on any given variants page.
Comment: Help with Ideathon
by
Mensur Dlakic
★
30k
I don't see a single question here. Saying `I need your expert help in figuring out how I can make this analysis useful!` is too open-ended…
Comment: Differences between published differential gene expression results and own analy
by
ATpoint
89k
Please link the paper, lets see their methods. With human data it can well be that they included something like surrogate variables to damp…
Comment: Differences between published differential gene expression results and own analy
by
dsull
★
7.7k
There are many ways to do normalization and one of the correct ways is simply to plug raw counts into deseq2 (the math that deseq2 uses to …
Traffic: 5480 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6