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> align_ch returns tuples like [sample_name, [read1, read2]]. I want aligned_input tuples to look like [index_dir, sample1, read1, read2].
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So should your command not be (assuming these are the right files) ?
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ADDENDUM: I have seen that pharokka already provides a tbl file; anyway, the question remains: if I needed to convert a gff to sequin with …
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Thank you, I have updated the title as suggested. But in the command, there a gff, a tsv, and a protein fasta. The list of files is:
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Have included the links to the papers I mentioned in another comment for reference!
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These are the 2 papers I mentioned previously that used data other than raw counts for their analysis: https://onlinelibrary.wiley.com/doi/…
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