Limit : all time
all time today this week this month this year
121,987 results • Page 254 of 2440
Sort: Rank
Rank Views Votes Replies
2
votes
7
replies
1.9k
views
Design matrix to remove technical replicate effect
edgeR
updated 23 months ago by • 0 • written 2.4 years ago by ▴ 10
1
vote
1
reply
1.0k
views
Differentially expressed gene with high log2foldchange by DESeq2; but not meaningful at the individual level
DESeq2 RNA-seq DGEA
2.3 years ago by Sara ▴ 40
1
vote
2
replies
987
views
Abyss taking a Long time to run
abyss assembly genome fastq
2.4 years ago by Maliha ▴ 30
0
votes
2
replies
2.0k
views
Import or read Snapgene .dna files into R
R .dna snapgene
2.4 years ago by eggrandio ▴ 40
4
votes
4
replies
1.6k
views
Segmentation fault Biopython pairwise alignment
biopython alignment
updated 2.4 years ago by 22k • written 2.4 years ago by ▴ 20
0
votes
3
replies
1.3k
views
Biological replicates in RNA-seq
RNA-seq biological-replicates
updated 2.4 years ago by ★ 2.0k • written 2.4 years ago by • 0
0
votes
0
replies
559
views
BEAST Divergence time Analysis
time BEAST BEAUti divergence
2.4 years ago by ahmadjoyyia ▴ 30
0
votes
0
replies
664
views
Differential Gene Expression analysis in heterogeneous tissues
RNA-seq deseq2
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 250
4
votes
2
replies
3.2k
views
Plotting heat map with significance based on multiple columns
R Python Heatmap
updated 2.4 years ago by 5.1k • written 2.4 years ago by ▴ 70
1
vote
1
reply
1.1k
views
Issue with MiSeq Demultiplexing: Unexpected Ns in I5_Index
MiSeq Demultiplexing Sequencing
updated 2.4 years ago by 154k • written 2.4 years ago by • 0
4
votes
5
replies
3.9k
views
bitr() doesn't recognize the keys I've entered as valid gene symbols for my organism's database ('SYMBOL').
pathway-analysis clusterProfiler
2.4 years ago by Medeea ▴ 20
4
votes
2
replies
1.7k
views
vg: Mapping fewer reads to a genome graph than a linear reference
giraffe mapping pangenome vg
updated 2.4 years ago by ▴ 600 • written 2.4 years ago by ▴ 30
1
vote
1
reply
1.1k
views
Variant Annotation
Variant-Annotation VCF R
updated 2.4 years ago by 45k • written 2.4 years ago by • 0
0
votes
0
replies
727
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 2.2 years ago by 45k • written 2.4 years ago by ★ 2.6k
0
votes
2
replies
1.4k
views
too many zeros in 16S rRNA amplicon sequencing data
16S rRNA
2.3 years ago by zhangdengwei ▴ 210
0
votes
0
replies
1.4k
views
Job: Looking for a internship or master's course in Bioinformatics
masters internship career
updated 2.4 years ago by 45k • written 2.4 years ago by • 0
2
votes
1
reply
7.9k
views
Seurat 'DoHeatmap()' hierarchical clustering
DoHeatmap Seurat clustering
updated 2.4 years ago by ★ 1.7k • written 2.4 years ago by ▴ 20
4
votes
2
replies
1.1k
views
Bioinformatics in drug designing
pharmaceutical
2.4 years ago by nishimalhotra2612 ▴ 50
0
votes
1
reply
741
views
Finding Kinetic Parameters from Western Blot images
image-processing western-blot
updated 2.4 years ago by 45k • written 2.4 years ago by • 0
3
votes
1
reply
3.9k
views
How To Interpret The Numbers In The Cnvnator Genotype Output
genotyping
updated 2.4 years ago by • 0 • written 12.8 years ago by ▴ 150
0
votes
0
replies
577
views
Chipseq data peak calling issue
ChIP-seq RNA sequencing
updated 2.4 years ago by 45k • written 2.4 years ago by • 0
4
votes
4
replies
1.6k
views
rose identifies super enhancers, how to output PDF files
PDF rose
updated 2.4 years ago by 45k • written 2.4 years ago by • 0
0
votes
0
replies
636
views
I want to set the null hypothesis for the test of genetic correlation to rg=1.
correlation LDSC genetic
2.4 years ago by Apprentice ▴ 190
4
votes
2
replies
1.7k
views
How to download iGenomes from S3
iGenome
2.4 years ago by Chris ▴ 360
2
votes
3
replies
1.1k
views
sambamba-depth: All files must be coordinate-sorted error?
read linux sambamba
updated 2.4 years ago by 166k • written 2.4 years ago by ▴ 20
2
votes
6
replies
4.0k
views
Prokka installation - compilation aborted
database Prokka compilation indexing
2.4 years ago by eimanpharmacist ▴ 20
0
votes
2
replies
1.1k
views
About inconsistent cell counts per samples obtained in small nuclear RNAseq data.
Seurat QC Single-Cell
2.4 years ago by bk11 ★ 3.1k
0
votes
3
replies
1.8k
views
samtools installed but error message: Library not loaded: @rpath/libcrypto.1.0.0.dylib
Monterey samtools macOS
updated 2.4 years ago by 154k • written 3.5 years ago by • 0
8
votes
6
replies
2.6k
views
samtools install error
samtools
updated 2.4 years ago by • 0 • written 2.5 years ago by ▴ 30
3
votes
3
replies
1.2k
views
About per tile sequence quality
fastqc
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 360
1
vote
1
reply
788
views
Identifying Mutation Frequency Changes in MSAs over time?
Mutation Fasta MSA MutationRate RNA-Seq
updated 2.4 years ago by 4.8k • written 2.4 years ago by ▴ 50
0
votes
2
replies
1.2k
views
Variant calling in WES vs WGS
snpEff WGS SNPs WES
updated 2.4 years ago by ▴ 290 • written 2.4 years ago by ▴ 90
1
vote
1
reply
3.6k
views
Import Pymol into Python Script
Pymol python
updated 2.4 years ago by ★ 2.1k • written 2.4 years ago by • 0
0
votes
0
replies
762
views
Tool: Easy API For Running Bioinformatics Jobs Via Python In The Cloud
api execution
2.4 years ago by Sasha ▴ 850
0
votes
2
replies
1.7k
views
How to generate cDNA file from genome FASTA and GTF?
cdna scrna-seq
updated 2.4 years ago by 6.2k • written 2.4 years ago by • 0
0
votes
11
replies
3.1k
views
how to run FacetsSuite wrapper scripts on command line
facets-suite facets
updated 2.4 years ago by 154k • written 2.4 years ago by • 0
2
votes
1
reply
755
views
How do you add an ORF that overlaps the two regions where a circular genome is cut in Genbank?
genbank
2.4 years ago by Chvatil ▴ 140
4
votes
3
replies
5.8k
views
INSTALLING DEseq2 via conda
DEseq2 conda RNA-seq
updated 2.1 years ago by 45k • written 2.4 years ago by ▴ 30
6
votes
3
replies
1.4k
views
grep value from html file
cat script commandline shell grep
updated 2.4 years ago by 15k • written 2.4 years ago by ▴ 110
1
vote
1
reply
816
views
making metadata file for differential gene expression analysis
RNAseq
updated 2.4 years ago by ★ 2.1k • written 2.4 years ago by ▴ 280
1
vote
2
replies
1.0k
views
Create clustered bar chart in R
R ggplot visualization
2.4 years ago by Prangan ▴ 20
0
votes
0
replies
944
views
Picard's CollectGcBiasMetrics gc-bias plot- help with interpretation
picard gc-bias wes
2.4 years ago by bompipi95 ▴ 170
8
votes
5
replies
2.3k
views
Genes' fpkm values through cufflink
Cufflink RNA-seq fpkm
2.4 years ago by arsala521 ▴ 60
0
votes
3
replies
1.2k
views
Which data should I select in Encode chip-seq data?
chip-seq chipseq encode chip
2.4 years ago by tinyimp80 • 0
0
votes
2
replies
1.6k
views
Repbase database and transposon sequence
TE TSD TIRs Tpase
2.4 years ago by manaswiniparija3 ▴ 60
1
vote
4
replies
2.5k
views
IGV displays genomic coordinates in a 1-based system or 0-based?
Integrative-Genomics-Viewer IGV
updated 2.4 years ago by 89k • written 2.4 years ago by ▴ 50
0
votes
4
replies
1.7k
views
How do I add row names to pheatmap() when I am using a pre-normalized matrix?
pheatmap heatmap rna-seq
updated 2.4 years ago by ★ 1.9k • written 2.4 years ago by ▴ 60
3
votes
2
replies
1.3k
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
2.4 years ago by PeterC_NCBI ▴ 520
3
votes
5
replies
3.5k
views
Uniprot API access to download .pdb files
PDB API Python Uniprot
2.4 years ago by BioGrad321 • 0
2
votes
1
reply
791
views
Analytical criteria to say a transcript is expressed in single-cell
counts scRNA-seq single-cell expression-matrix
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 80
121,987 results • Page 254 of 2440
Recent Votes
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Comment: Quantification using salmon in alignment-based mode after minimap2 run
Answer: Quantification using salmon in alignment-based mode after minimap2 run
Comment: Quantification using salmon in alignment-based mode after minimap2 run
Answer: Corresponding BAM files
Answer: Tools To Calculate Average Coverage For A Bam File?
A: Bioinformatic Cartoon
Recent Locations • All
Oviedo, 1 minute ago
UK, 3 minutes ago
United States, 3 minutes ago
United States, 5 minutes ago
Spain, 5 minutes ago
Berlin, 5 minutes ago
UCLA, 6 minutes ago
Recent Awards • All
Scholar to GenoMax 154k
Popular Question to eebloom ▴ 110
Popular Question to 1769mkc ★ 1.3k
Popular Question to andres.firrincieli 3.9k
Popular Question to biotrekker ▴ 110
Popular Question to Ibrahim Tanyalcin ★ 1.2k
Scholar to DdogBoss ▴ 30
Recent Replies
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere by GenoMax 154k
This question is about simulating reads and not read mapping.
Comment: GUI commercial software for 10x single cell gene expression analysis by yura.grabovska ▴ 830
I have fun memories of month-long discussions with Illumina support about their GenomeStudio methylation module asking them to provide info…
Comment: scVI vs Harmony, which is better for cell type based clustering in brain tissue? by Arup Ghosh 3.4k
Try the references from the following publications. https://www.nature.com/articles/s41591-024-03150-z https://www.science.org/doi/10.112…
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions by Phil Ewels ★ 1.5k
There's an easier way than manually renaming the output files (though you can do this, and it works) - you can use the `name` (aka `stageAs…
Answer: ::Last Call:: In-Person Workshop - NGS Epigenomics Data Analysis (November 3-5 i by ecSeq Bioinformatics ▴ 20
Last Call for this event. Apply now, if you like to join.
Comment: Difficulty running FoldX in linux by Mensur Dlakic ★ 30k
The program is definitely working. It doesn't matter that it didn't produce `TER` and `END` lines at the end. Those are optional in PDB fil…
Answer: Best set of tools / workflows for predicting the biosynthesis pathways of comple by ehaag ▴ 100
I tried [searching for tools in the NIAID Data Ecosystem][1] and found something that may be relevant. [PathPred][2] is an enzyme catalyzed…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere by ehaag ▴ 100
I did a quick [search for tools in the NIAID Data Ecosystem][1] and found a few that map Illumina short reads onto a reference genome, incl…
Answer: Corresponding BAM files by GenoMax 154k
You can get BAM files for 10x single-cell data and they can be found under the `Data Access` tab of the SRA record under the `Original Form…
Comment: GTF file for HIV strain pNL4-3 by Ales ▴ 50
All of the genome assemblies are from the LANL compendiu, match accession with GENBANK (>2,000 complete genome assemblies from the 2021 LAN…
Comment: Hisat2 splice sites extract blank files by Ales ▴ 50
hisat2_extract...py scripts make several assumptions about the input GTF files. For example, they require gene_id field to be present for a…
Comment: GTF file for HIV strain pNL4-3 by GenoMax 154k
> This project started from my personal need to improve spliced alignment Are there plans to submit these annotations to NCBI/EBI? Are yo…
Comment: Hisat2 splice sites extract blank files by Ales ▴ 50
Interestingly, HIV/SIV specifically does have quite an elaborate splicing system which regulates translation. However, only one of the spli…
Answer: Analyzing CRISPR and RNAi genome wide screens by Meisam ▴ 250
I'm late to the party but in case someone has the same question: one practical approach is using **rank-based** methods to meta-analyse you…
Answer: meta data analysis for clustering by Meisam ▴ 250
I'm late to the party but one practical approach is using **rank-based** methods to meta-analyse your screens, which basically bypass the n…
Traffic: 3161 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6