Limit : all time
all time today this week this month this year
121,832 results • Page 412 of 2437
Sort: Rank
Rank Views Votes Replies
5
votes
6
replies
1.6k
views
Is 60,000 estimated cell per sample in sn/scRNASeq too high?
scsnRNASeq
3.2 years ago by Tania ▴ 180
0
votes
2
replies
5.3k
views
How to convert 10x matrix.mtx.gz files to hdf5 format?
cellranger scRNA-seq hdf5
updated 3.2 years ago by 45k • written 3.2 years ago by ▴ 30
0
votes
1
reply
614
views
Non-SNP polimorphism used in GWAS
polimorphisms GWAS
updated 3.2 years ago by 2.9k • written 3.2 years ago by • 0
5
votes
2
replies
6.6k
views
How should I interpret this Mummer output files?
mapping mummer show-coords
updated 3.2 years ago by ▴ 20 • written 11.3 years ago by ▴ 690
0
votes
0
replies
515
views
Explore transcription data of pseudogenes
pseudogenes transcriptome databases RNA-seq
3.2 years ago by Marco Pannone ▴ 810
0
votes
1
reply
869
views
Harmonized RNA-Seq Analysis of Different GDC Queried Projects
GDC Normalization DGE RNA-Seq
updated 3.2 years ago by ★ 1.3k • written 3.2 years ago by ▴ 70
6
votes
7
replies
5.8k
views
6 follow
LINCS L1000 dataset column names
LINCS L1000
updated 5.7 years ago by ▴ 30 • written 9.0 years ago by ▴ 50
2
votes
1
reply
788
views
Locating SNPs from genes of interest in VCF
vcf snps bcftools mpileup
updated 2.2 years ago by 45k • written 3.2 years ago by ▴ 70
8
votes
4
replies
3.2k
views
enrichMap function is not found
enrichMap
updated 3.2 years ago by ▴ 50 • written 3.6 years ago by ▴ 50
0
votes
1
reply
628
views
How to align integer (non-DNA/protein) sequences?
alignment algorithm
updated 3.2 years ago by ★ 29k • written 3.2 years ago by • 0
1
vote
1
reply
661
views
Access GEO data and retrieve fastQ files
GEO fastQ
updated 2.2 years ago by 45k • written 3.2 years ago by ▴ 30
3
votes
2
replies
1.1k
views
How is contig length calculated ?
tuberculosis Contig assembly Genome Mycobacterium
3.2 years ago by Alewa ▴ 190
5
votes
2
replies
1.5k
views
How to avoid overfitting using SVA?
RNA-Seq sva overfitting
updated 3.2 years ago by 89k • written 5.0 years ago by ▴ 390
1
vote
1
reply
771
views
Can you compare the abundance of different proteins within a sample?
CCLE TCGA proteomics
updated 3.2 years ago by 89k • written 3.2 years ago by ▴ 90
0
votes
1
reply
888
views
BWA MEM ValueError: Type names and field names must be valid identifiers: 'P-0052783-N01-WES_IGO_12502_F_1_S12_L001'
BWA Treeomics
updated 3.2 years ago by 166k • written 3.2 years ago by • 0
0
votes
0
replies
546
views
"Best" freewares for linkage analyses?
Equilibrium Linkage Disequilibrum haplotyping
3.2 years ago by Joel Wallenius ▴ 220
3
votes
3
replies
2.0k
views
Why after normalization of scRNA-Seq data by DESeq2 the p-value of a large number of genes equal zero? How to deal with them?
scRNA-Seq DEG DESeq2 volcano Seurat
updated 3.2 years ago by ▴ 190 • written 3.2 years ago by ▴ 110
2
votes
2
replies
876
views
complexity in sn/scRNASeq explanation
snscRNASeq
3.2 years ago by Sharon ▴ 610
0
votes
4
replies
1.1k
views
Drop-seq pipeline
single-cell pipeline Drop-seq scRNA-seq
3.2 years ago by fluentin44 ▴ 20
1
vote
2
replies
855
views
Professional Experience Bioinformatics Software Developer?
software-development
updated 2.7 years ago by 45k • written 3.2 years ago by • 0
4
votes
13
replies
13k
views
Tabix With Gff3
tabix gff gff3
updated 3.2 years ago by 9.3k • written 11.6 years ago by • 0
0
votes
0
replies
387
views
getting a mtrice that only shows the hits
blastn
3.2 years ago by jihenelgazel5 • 0
0
votes
0
replies
864
views
Blog: Recent advances in understanding the rapeseed genome provide important insights into rapeseed breeding
NGS Rapeseed Biotechnology
3.2 years ago by Novogene ▴ 510
2
votes
2
replies
1.1k
views
DESeq2: Multiple disease condition vs Normal
deseq2 RNASeq
updated 2.7 years ago by 45k • written 3.2 years ago by • 0
0
votes
0
replies
409
views
sn/scRNASeq low fraction of reads error?
snscRNASeq
3.2 years ago by Claire • 0
4
votes
4
replies
2.9k
views
Cufflinks stuck in processing locus
RNA-Seq Assembly software error
updated 3.2 years ago by 7.8k • written 8.0 years ago by ▴ 10
0
votes
0
replies
405
views
The genome survey map has miscellaneous peaks
genome survey
3.2 years ago by zhangtianyuan • 0
0
votes
0
replies
536
views
Bash script for QUAST
genomics quast
updated 3.2 years ago by 89k • written 3.2 years ago by • 0
0
votes
6
replies
2.1k
views
Demultiplexing RNAseq data with tag file and barcodes (single end)
RNAseq bash Demultiplexing zUMI
3.2 years ago by zbidav ▴ 30
1
vote
4
replies
1.7k
views
Read is confidently mapped to the transcriptome in Cell Ranger
cellranger intergenic intron transcriptome alignment
updated 3.2 years ago by 153k • written 3.2 years ago by ▴ 40
3
votes
2
replies
1.3k
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 2.2 years ago by 45k • written 3.2 years ago by ▴ 50
0
votes
0
replies
600
views
CCLE copy number liftover files
number CCLE copy
3.2 years ago by heskett ▴ 110
1
vote
3
replies
1.2k
views
homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
homer
updated 3.2 years ago by ★ 1.9k • written 3.2 years ago by ▴ 80
0
votes
0
replies
546
views
How to create data set for SNF?
SNF
3.2 years ago by dec986 ▴ 380
3
votes
5
replies
1.6k
views
Resolving Salmon Errors?
metatranscriptomics salmon rna-seq rna transcriptomics
3.2 years ago by pearl2070 ▴ 10
0
votes
3
replies
970
views
VCF File Showing SNP, but Genotyping Column Not Representing Said SNP
VCF
updated 3.2 years ago by 45k • written 3.2 years ago by ▴ 60
0
votes
4
replies
1.1k
views
How can i process 2d image to 3d in R
image-processing offtopic
3.2 years ago by logbio ▴ 30
2
votes
1
reply
558
views
Retrieve multiple exon numbers from txt with coordinates
exons
updated 3.2 years ago by 153k • written 3.2 years ago by • 0
0
votes
0
replies
897
views
Job: Bioinformatician_Start up first hire
Aging Neuro Proteomics
updated 2.7 years ago by 45k • written 3.2 years ago by • 0
6
votes
29
replies
4.9k
views
Column lengths differ error (ArchR)
atac-seq cellranger r archr
updated 3.2 years ago by 153k • written 3.2 years ago by ▴ 30
0
votes
0
replies
499
views
Require DH script
DH TajimasD H-statistics
3.2 years ago by taniamahmood38 ▴ 60
0
votes
0
replies
535
views
Is Tajima's Pi and Wattersons Theta site frequency spectrum statistics?
TajimasD WattersonsTheta
3.2 years ago by taniamahmood38 ▴ 60
1
vote
0
replies
644
views
Method/approach/algorithm for multi-omics integrative analysis for mechanism insights
integrative gwas omics insights
3.2 years ago by Shicheng Guo ★ 9.6k
0
votes
0
replies
500
views
problem with gene abundance calculation
bam gtf bash R GFF
3.2 years ago by v.berriosfarias ▴ 140
2
votes
2
replies
1.3k
views
By what criteria I can filter the somatic variants after annotation?
vcf ANNOVAR variant filter
updated 3.2 years ago by ▴ 930 • written 3.2 years ago by ▴ 110
0
votes
2
replies
1.0k
views
Entrez e-link Puchem compound
pubchem elink entrez
updated 2.0 years ago by 45k • written 3.2 years ago by • 0
1
vote
5
replies
1.6k
views
Can you force two sequences to align with pairwise alignment?
R pairwise alignment
3.2 years ago by msening • 0
0
votes
10
replies
2.5k
views
Bedtools maskfasta error - std::out_of_range
bedtools maskfasta
updated 2.2 years ago by 45k • written 3.2 years ago by • 0
2
votes
0
replies
1.5k
views
Job: Bioinformatics Research Scientist-Epigenetics(USA, Memphis, TN, St. Jude Children's Research Hospital)
Tennessee Epigenetics Hospital Bioinformaitcs
8 months ago by xubeisi ▴ 30
0
votes
1
reply
2.4k
views
Error creating pool for permutation test (PeakPermTest from ChipPeakAnno)
permutation ChIP-Seq ChipPeakAnno
updated 3.2 years ago by ▴ 10 • written 7.1 years ago by ▴ 90
121,832 results • Page 412 of 2437
Recent Votes
Motif analysis of DMRs (Differentially Methylated Regions) by HOMER
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
C: DiffBind error when calling dba.count
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Recent Locations • All
United Kingdom, 1 minute ago
Germany, 8 minutes ago
United Kingdom, 9 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 9 minutes ago
United States, 13 minutes ago
Canada, 27 minutes ago
United States, 39 minutes ago
Recent Awards • All
Popular Question to graeme.thorn ▴ 110
Popular Question to 1769mkc ★ 1.3k
Popular Question to himanshu0102 • 0
Popular Question to AHerik ▴ 40
Popular Question to ecSeq Bioinformatics ▴ 20
Popular Question to Penny • 0
Popular Question to ja569116 • 0
Recent Replies
Answer: Criteria for choosing variants by benformatics 4.2k
The whole question seems very confusing as if there is a substantial knowledge gap. Calling variants in tumor-normal pairs is relatively…
Comment: How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2? by GenoMax 153k
> Cannot run FragGeneScan. Please indicate the file directory in 'setting' file. Looks like you will need to add the. directory containing…
Comment: How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2? by Pallishree • 0
i have run this command (maxbin2_env) [m5@mks1 FASTQ]$ /data/sms/home/m5/.conda/envs/maxbin2_env/bin/run_MaxBin.pl \ ? -contig /…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by Arup Ghosh 3.4k
The `--nv` flag for apptainer is there?
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by Arup Ghosh 3.4k
The GPUs have 24 GB memory each but only worked with the flag.
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by Pierre Lindenbaum 166k
it doesn't work with `--htvc-low-memory` (same error with 4.5.0-1 )
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by GenoMax 153k
`Parabrix` is not supported on multi-instance GPU's (MIG) so having that setting disabled is perfect.
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by GenoMax 153k
That option is indicated for using a 16GB GPU. Was that the case or even though you had a >16 GB GPU, this option was needed to fix the err…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by Arup Ghosh 3.4k
I faced a similar issue with Parabricks and version 4.3.0; using `--htvc-low-memory` resolved the problem.
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by Mensur Dlakic ★ 29k
Maybe this will help: https://stackoverflow.com/questions/67091056/gpu-allocation-in-slurm-gres-vs-gpus-per-task-and-mpirun-vs-srun
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in by Jordan M Eizenga ▴ 750
GCSA2 indexing is fairly demanding on disk space, so that can happen. I would generally recommend having 1-2 TB of disk availability if you…
Comment: how to start by shelkmike ★ 1.7k
If you plan to become a professional bioinformatician, I don't recommend the approach suggested by Joe and Yura Grabovska (learning bioinfo…
Comment: vg input and output files by GenoMax 153k
Have you looked at this page: https://github.com/vgteam/vg/wiki/Basic-Operations There is a pipeline illustration on this page that shows …
Comment: Criteria for choosing variants by ATpoint 89k
To me knowledge, ensembl approach means that you run several tools and then run some sort of filtration and classification approach to deci…
Comment: vg input and output files by Pierre Lindenbaum 166k
vg is a toolkit containing different tools. What are you talking about when you want to use 'input' and 'output' files.
Traffic: 2621 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6