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1
vote
3
replies
1.2k
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regression analysis between two datasets
correlation multidimensional python datasets regression
updated 3.2 years ago by 45k • written 3.3 years ago by • 0
7
votes
8
replies
6.6k
views
diferent contigs chrM
alignment
updated 3.0 years ago by ★ 1.8k • written 9.2 years ago by ▴ 110
4
votes
9
replies
4.0k
views
Blast+ remote database names
blast remote databases Blastplus
updated 2.1 years ago by 153k • written 3.7 years ago by • 0
3
votes
7
replies
1.8k
views
How to interpret a phylogenetic tree?
Neuroglobin Phylogenetic Likelihood Maximum BLASTN trees
3.3 years ago by azi • 0
2
votes
6
replies
2.0k
views
Matchless comparison between Roary and Prokka: missing genes in "gene_presence_abscence.csv"
id roary gene prokka
updated 10 months ago by ▴ 10 • written 3.3 years ago by ▴ 10
0
votes
1
reply
872
views
wgcna without clinical traits
wgcna rnaseq
updated 3.3 years ago by 22k • written 3.3 years ago by ▴ 60
4
votes
3
replies
2.5k
views
DESeq2 installation error
DESeq2 RNA-Seq ubuntu
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 10
1
vote
2
replies
4.8k
views
What to do with Seurat metadata and counts in separate text files?
single-cell seurat
3.2 years ago by 5b54ea20 • 0
2
votes
5
replies
3.5k
views
fatal error in autodock
Autodock
updated 2.3 years ago by 45k • written 3.3 years ago by • 0
0
votes
2
replies
1.7k
views
RSEM prepare reference error
RSEM
3.3 years ago by billyconan6a • 0
0
votes
1
reply
742
views
how to predict gene expression from genotype file using already developed elastic net model
gene expression snp vcf
updated 3.3 years ago by 166k • written 3.3 years ago by ▴ 150
1
vote
2
replies
1.6k
views
gene abundance profiling from metagenomes
gene-abundance mapping metagenomics
3.3 years ago by v.berriosfarias ▴ 140
0
votes
2
replies
1.5k
views
Variant annotation help - predictCoding error message
VCF RStudio annotation variant proteinCoding
3.3 years ago by Rozita ▴ 40
0
votes
0
replies
828
views
Problem in Installing Seurat in rpy2.robjects
Seurat.geos rpy2
3.3 years ago by akilabioinfo ▴ 10
0
votes
0
replies
630
views
Require composite script of Hp and ROH statistics
ROH Pooled-heterozygosity github script
3.3 years ago by taniamahmood38 ▴ 60
0
votes
0
replies
703
views
How to make a subset based on protein expression from CITE-seq data using R
subsets ADT CITE-seq
3.3 years ago by yang.zhizhang ▴ 10
0
votes
0
replies
846
views
Using AO and RO values instead of AD in VCF files
AO GATK RO VCF AD
3.3 years ago by Rozita ▴ 40
2
votes
4
replies
1.2k
views
Counting variants with SnpEff
snpEff
updated 3.3 years ago by 166k • written 3.3 years ago by ▴ 350
0
votes
1
reply
561
views
How to get sequence combination with Rsamtools?
Bioinformtaics
updated 3.3 years ago by 11k • written 3.3 years ago by • 0
3
votes
2
replies
4.2k
views
How to get sample details from NCBI datasets
Assembly Datasets Sample NCBI Accession details
updated 3.3 years ago by ★ 3.9k • written 3.3 years ago by ▴ 30
1
vote
2
replies
1.2k
views
Tool: Roakvar: do genomic variant analyses with R
oakvar genomics roakvar variant analysis
3.3 years ago by Ryangguk Kim ▴ 90
3
votes
1
reply
1.3k
views
Tool: OakVar: genomic variant analysis tool
genomics variant
updated 2.7 years ago by 45k • written 3.3 years ago by ▴ 90
1
vote
1
reply
1.4k
views
DMRcate maxdiff and meandiff calculation
DMRcate
updated 3.3 years ago by • 0 • written 4.4 years ago by ▴ 10
8
votes
5
replies
3.3k
views
Checking whether protein sequences have start and stop codon
BLASTp
3.3 years ago by lukhanyomakhabane ▴ 30
2
votes
2
replies
919
views
FASTA sequences extraction
FASTA sequences
3.2 years ago by Roy.anupama11 • 0
25
votes
6
replies
5.9k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 2.8 years ago by 45k • written 7.0 years ago by ★ 9.6k
3
votes
3
replies
1.3k
views
Grouping entries in a column based on string dataframe
python biopython
updated 3.3 years ago by ▴ 930 • written 3.3 years ago by ▴ 60
88
votes
2
replies
63k
views
6 follow
Tutorial: How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 2.5 years ago by 45k • written 12.2 years ago by 11k
0
votes
1
reply
2.9k
views
Can someone explain to me what is the difference between clustering and collapsing of of reads in Iso-Seq analyses?
Iso-Seq PacBio rna-seq SMRT-Tools transcripts
updated 3.3 years ago by • 0 • written 4.5 years ago by • 0
0
votes
2
replies
947
views
ggplot2 filter
R
3.3 years ago by 3095916029 • 0
0
votes
1
reply
1.3k
views
Job: Research Scientist (Fungal & Algal Program)
Research
updated 3.3 years ago by ▴ 140 • written 3.3 years ago by ▴ 70
0
votes
1
reply
740
views
Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
updated 7 months ago by • 0 • written 3.3 years ago by ▴ 140
1
vote
2
replies
1.5k
views
Perl script error:syntax error near unexpected token `)'
augustus perl
3.3 years ago by slin023 ▴ 20
0
votes
0
replies
921
views
valid UMIs in STARsolo output?
starsolo single-cell UMIs RNA-seq
3.3 years ago by hamarillo ▴ 80
1
vote
8
replies
2.9k
views
admixture crashes without explanation
admixture
updated 3.2 years ago by 45k • written 3.3 years ago by ▴ 380
0
votes
1
reply
2.7k
views
KEGG Pathway using gageData
rstudio gage keggpathway RNASeq
updated 3.3 years ago by 89k • written 3.3 years ago by • 0
2
votes
1
reply
1.1k
views
Discrepancy in pysam fetching region
pysam python fetch bam
3.3 years ago by mhasa006 ▴ 70
2
votes
7
replies
1.9k
views
6 follow
Find exon-exon spanning reads
exon
3.3 years ago by Jipjop ▴ 10
0
votes
2
replies
1.1k
views
How to propose a list of genes not involved in a particular disease
GO
updated 2.7 years ago by 45k • written 3.3 years ago by ▴ 10
1
vote
3
replies
1.3k
views
Error when trying to make MetaXcan run through Snakemake
MetaXcan Python PrediXcan Snakemake
updated 3.3 years ago by 23k • written 3.3 years ago by ▴ 50
0
votes
1
reply
1.0k
views
CTCF sites TAD
3D genome
updated 3.3 years ago by 153k • written 3.3 years ago by ▴ 120
1
vote
3
replies
2.3k
views
Help with plotting heatmap with both row and column label annotations
pheatmap ComplexHeatmap R Heatmap annotations
updated 3.3 years ago by ★ 1.9k • written 3.3 years ago by ▴ 270
4
votes
2
replies
841
views
Extract Reads From A Bam File That Fall OUTSIDE A Given Region
bam
updated 3.3 years ago by 166k • written 3.3 years ago by ▴ 90
1
vote
1
reply
2.1k
views
use Trinotate for non trinity assembly
annotatio
updated 3.3 years ago by • 0 • written 8.7 years ago by ▴ 30
12
votes
3
replies
1.3k
views
A question about code sharing for publication
code
updated 2.7 years ago by 45k • written 3.3 years ago by ▴ 160
6
votes
1
reply
3.8k
views
snp phylogenetics vcf to tree
SNP phylogenetics vcf
updated 3.3 years ago by • 0 • written 8.5 years ago by ▴ 130
1
vote
7
replies
3.7k
views
Error when using blastn in biopython
biopython blastn
updated 3.3 years ago by • 0 • written 5.4 years ago by ▴ 40
2
votes
0
replies
778
views
News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
3.3 years ago by Elisabeth Gasteiger ★ 2.4k
0
votes
0
replies
532
views
Where to find database for breast cancer phynotype?
clinvar cancer database breast_cancer
3.3 years ago by mera El ▴ 10
0
votes
3
replies
2.2k
views
'blastp' is not recognized as an internal or external command using Bio.Blast.Applications
biopython blast
updated 3.3 years ago by • 0 • written 5.1 years ago by • 0
121,831 results • Page 419 of 2437
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Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by Pierre Lindenbaum 166k
@genomax I'm using the 'GPU' queue of my cluster (SLURM). The very same config was used with another parabrick subtool and I got not probl…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by GenoMax 153k
Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
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thank you.
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Are the batches biological replicates?
Comment: how to start by shelkmike ★ 1.7k
If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
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* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc. * Look at the methods of papers…
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"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
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I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
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As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
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> Read in data Add an example of what is in `data.csv`.
Comment: How to submit a bacterial (endosymbiont) ITS rDNA sequence to GenBank? by GenoMax 153k
That is unfortunate. Perhaps try one more time to see if you can reach a more considerate help desk person with this try. In dealings with …
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Yes, I tried asking support for help, but I received a rude response. I was too embarrassed to ask again.
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Were https://www.genewiz.com/ and/or Novogene https://www.novogene.com/ on your list already? Several university sequencing core labs may a…
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