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121,804 results • Page
422 of 2437
Sort: Rank
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Votes
Replies
2
votes
4
replies
1.3k
views
DESeq2 batch effects with nonuniform design matrix
DESeqDataSet
DESeq2
batch
updated 2.3 years ago by
Ram
45k • written 3.3 years ago by
mcsimenc
▴ 30
1
vote
2
replies
1.4k
views
how to evaluate a small increase in AUC
learning
AUC
machine
3.3 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
468
views
Alternative to NCA
network
updated 2.7 years ago by
Ram
45k • written 3.3 years ago by
star
• 0
2
votes
4
replies
1.0k
views
Filter 2 mapped VCF files so the "POS" are the same?
VCF
bcftools
3.3 years ago by
JBC
• 0
0
votes
5
replies
1.8k
views
Basic sed question
fasta
sed
updated 3.3 years ago by
GenoMax
153k • written 3.3 years ago by
zhousun21
▴ 40
0
votes
0
replies
1.3k
views
Job:
Bioinformatic Postdoc UCLA Cancer Research
LoLab
3.3 years ago by
rlo
• 0
3
votes
0
replies
858
views
News:
Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics
binning
updated 3.3 years ago by
GenoMax
153k • written 3.3 years ago by
Luispedro
▴ 60
2
votes
2
replies
895
views
Splitting multifasta by string match
fasta
bash
perl
3.3 years ago by
Winston
▴ 10
0
votes
1
reply
824
views
Steps after first de novo assembly
assembly
updated 3.3 years ago by
Istvan Albert
103k • written 3.3 years ago by
Tong
▴ 10
4
votes
4
replies
3.5k
views
Plot multiple genes from dds data
Plotcounts
3.3 years ago by
Fatemeh
▴ 40
0
votes
0
replies
803
views
Job:
Senior Statistical Geneticist, Oxford-GSK Institute for Molecular and Computational Medicine (IMCM)
IMCM
Stat
Neuro
Gen
3.3 years ago by
SH01
• 0
0
votes
0
replies
2.5k
views
Job:
Statistical Geneticist, Oxford-GSK Institute for Molecular and Computational Medicine (IMCM) in data analysis and integration in neurodegenerative di…
IMCM
Neurodegeneration
Stat
Gen
3.3 years ago by
SH01
• 0
0
votes
0
replies
746
views
Job:
Senior Bioinformatician, Oxford-GSK Institute for Molecular and Computational Medicine (IMCM)
IMCM
neuro
updated 2.6 years ago by
Ram
45k • written 3.3 years ago by
SH01
• 0
0
votes
0
replies
1.0k
views
Job:
Bioinformatician, Oxford-GSK Institute for Molecular and Computational Medicine (IMCM)
IMCM
neuro
updated 2.6 years ago by
Ram
45k • written 3.3 years ago by
SH01
• 0
1
vote
2
replies
1.4k
views
Error finding variable features in Seurat
R
seurat
3.3 years ago by
sidrah.maryam
▴ 70
3
votes
0
replies
889
views
Herald:
The Biostar Herald for Monday, May 30, 2022
herald
3.3 years ago by
Biostar
3.6k
0
votes
2
replies
1.1k
views
How to demultiplex single cell rna-seq based on SNP mutation?
NGS
RNA-SEQ
singlecell
scRNA-seq
3.2 years ago by
ahmad mousavi
▴ 800
2
votes
19
replies
7.9k
views
7 follow
Merging VCF files into one
genome
sequencing
updated 3.3 years ago by
BioinformaticBird
▴ 110 • written 5.7 years ago by
sara.aglantarek
▴ 10
4
votes
8
replies
3.2k
views
Create singlecellexperiment object with colData
singlecellexperiment
3.2 years ago by
tien
▴ 40
0
votes
0
replies
578
views
how to display mutation and CNA data on the same waterfall but separate lines (unlike maftools::oncoplot)
waterfall
oncoplot
genvisr
3.3 years ago by
ejoffe
▴ 20
1
vote
2
replies
1.0k
views
UTR from gff format
gff
format
UTR
from
updated 3.3 years ago by
Michael
56k • written 3.3 years ago by
saifulislam99121
• 0
0
votes
0
replies
518
views
Alternative spliced protein structure?
Alternative
structural
Uniprot
splicng
PDB
3.3 years ago by
kapoornancy25
▴ 10
0
votes
0
replies
789
views
Blog:
A Beginners Guide to DNA-seq: Bioinformatics Analysis
DNA
Biotechnology
3.3 years ago by
Novogene
▴ 510
0
votes
8
replies
2.2k
views
Compare two bacterial sequence
sequence
bacterial
3.3 years ago by
saifulislam99121
• 0
9
votes
6
replies
3.1k
views
how to fetch intron coordinates from transcriptome.gtf file ? is there any direct tool ?
intron
updated 13 months ago by
Ram
45k • written 3.3 years ago by
isha.lily20
▴ 10
0
votes
0
replies
760
views
GCTA GREML - remove MHC? prune? use genotyped or imputed data?
GCTA
MHC
imputed
heritability
pruning
3.3 years ago by
meggo
• 0
1
vote
9
replies
1.6k
views
The I variable in the for loop changes
R
updated 3.3 years ago by
Michael
56k • written 3.3 years ago by
3095916029
• 0
3
votes
3
replies
1.1k
views
Unreasonable allele frequency (AF) found in my sample VCF file
PGS
3.3 years ago by
Bide
• 0
0
votes
0
replies
538
views
How to convert .bed/.bim/.fam file to .dat file to run --dosage command to get INFO
plink
dosage
updated 2.4 years ago by
Ram
45k • written 3.3 years ago by
Raju
• 0
2
votes
5
replies
2.5k
views
Is it possible to calculate TPM using 10X Genomics public data?
genomics
Python
R
genome
updated 3.3 years ago by
benformatics
4.1k • written 3.3 years ago by
Athena
• 0
0
votes
4
replies
2.1k
views
How to handle 2 peaks in fastQC GC plot...
alignment
RNAseq
Salmon
quality-control
FASTQC
updated 3.3 years ago by
Friederike
9.0k • written 3.3 years ago by
saipra003
▴ 20
2
votes
8
replies
4.7k
views
Batch correction for RNA-seq didn't work with ComBat-seq tool
RNA-seq
effects
batch
ComBat-seq
3.3 years ago by
ChuYi
• 0
2
votes
1
reply
829
views
Should we include genotype as covariates when performing EWAS?
methylation
EWAS
DNA
updated 2.7 years ago by
Ram
45k • written 3.3 years ago by
samuelandjw
▴ 270
5
votes
4
replies
4.5k
views
Biopython SASA looks wrong and disagrees with and Pymol SASA
biopython
python
pymol
updated 3.3 years ago by
laucalvet89
▴ 10 • written 3.4 years ago by
tomwr1ght
• 0
2
votes
4
replies
1.3k
views
Noob question: I want to use TCGA data to compare survival with mutations, how should I do it?
cancer
mutations
tcga
updated 2.5 years ago by
Ram
45k • written 3.3 years ago by
cdeantoneo31
▴ 20
1
vote
4
replies
1.1k
views
locus discrepancy
NGS
data
analysis
3.3 years ago by
LUCA
• 0
0
votes
0
replies
615
views
Forum:
Can Bioinformatics be used in developing a product?
product
company
business
updated 2.7 years ago by
Ram
45k • written 3.3 years ago by
user366312
▴ 20
1
vote
2
replies
883
views
Need help in finding pseudo genes using python script
ngs
python
genomics
updated 2.7 years ago by
Ram
45k • written 3.3 years ago by
Confused_human
▴ 30
5
votes
1
reply
670
views
No such file or directory: 'buccal_swab.unmapped1.fasta'
FileNotFoundError
updated 3.3 years ago by
GenoMax
153k • written 3.3 years ago by
정윤
• 0
0
votes
1
reply
664
views
Annotation SNP's with their Gene names
Gene
annotations
updated 3.3 years ago by
4galaxy77
2.9k • written 3.3 years ago by
Jalil Sharif
▴ 80
0
votes
0
replies
456
views
similarity of transcriptome
transcriptome
rna-seq
3.3 years ago by
biology_inform
▴ 60
0
votes
6
replies
1.9k
views
How to compare Sars-Cov-2 RefSeq to Influenza A RefSeq
NCBI
fasta
Biopython
3.2 years ago by
bwillkie
• 0
0
votes
1
reply
851
views
'syscall' is deprecated during installing jellyfish kmer counting
jellyfish
updated 24 months ago by
rubyeat88
▴ 10 • written 3.3 years ago by
Nur Syamilah
• 0
3
votes
7
replies
1.8k
views
Error of SAM file
bam
alignment
samtools
sam
sra
updated 3.3 years ago by
Pierre Lindenbaum
166k • written 3.3 years ago by
Pish
• 0
3
votes
8
replies
3.1k
views
Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
TPM
Xena
RSEM
FPKM
rna-seq
3.3 years ago by
Yang Shi
• 0
5
votes
2
replies
1.6k
views
enrichr
enrichr
updated 3.3 years ago by
Laura Luebbert
▴ 450 • written 3.7 years ago by
biology_inform
▴ 60
10
votes
3
replies
2.2k
views
Retrieving ensembl protein length with biomart
Ensembl
biomart
updated 3.3 years ago by
Laura Luebbert
▴ 450 • written 3.3 years ago by
iatz
▴ 30
0
votes
0
replies
512
views
How to find a recent list of human RBPs
RBP
updated 2.7 years ago by
Ram
45k • written 3.3 years ago by
iibrams07
▴ 10
4
votes
3
replies
1.3k
views
PCA plot interpretation after accounting for batch effects with SVA
SVA
plot
PCA
updated 3.3 years ago by
LauferVA
4.8k • written 3.3 years ago by
bart
▴ 50
0
votes
1
reply
609
views
CLIPdb data bulk download
CLIPdb
updated 2.8 years ago by
Giulia
• 0 • written 3.3 years ago by
hamanaka193
• 0
121,804 results • Page
422 of 2437
Recent Votes
Universal Human Reference RNA Sample
Universal Human Reference RNA Sample
Are these 10x samples too low quality for downstream analysis?
Are these 10x samples too low quality for downstream analysis?
C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
Answer: Question about substitution of KEGG
Answer: Universal Human Reference RNA Sample
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Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
Jordan M Eizenga
▴ 740
I would say the answer is unfortunately no. It would be possible to make smaller individual XG indexes, but downstream subcommands in the V…
Comment: Question about substitution of KEGG
by
dxh0222
▴ 10
Thanks for your recommendation! I think kofam_scan is suitable for me.
Comment: How to use CAFE from Orthofinder Results
by
san96
▴ 190
Hi, are you referring to Orthogroups.GeneCount.tsv? Thank you.
Comment: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴ 80
For example you can see it here, this is the first one in the table (SRR1215996): https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=ru…
Answer: Universal Human Reference RNA Sample
by
michael.j.apostolides
▴ 80
I believe here: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP025982 They are from the SEQC https://www-nature-com.proxy3.library.…
Answer: Question about substitution of KEGG
by
Mensur Dlakic
★ 29k
There is a tool that uses KEGG hidden Markov models and HMMer to scan individual proteins. It is not automated and may require some fiddlin…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
1769mkc
★ 1.3k
DRAGEN are you using dragen 4.4 release for your workflow?
Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
by
Jeremy Leipzig
23k
Your strategy sounds ok but we would need to see your modified file and the exact command you ran to know what happened.
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
Arindam
▴ 10
I think for mapping to the reference genome
Comment: Local Synteny Analysis with Uncharacterized Genes
by
Joe
22k
+1 for `clinker`, came here to make the same suggestion
Comment: Help with metagenomics viral
by
CECEL
• 0
Hi, thanks for answer! I'm using Kraken2, but the classified reads, when put on BLAST, didn't returned nothing, even in Viruses_db...
Comment: How to obtain a refFlat file for the Rat
by
GenoMax
153k
You can't mix and match genomes and annotation as we discussed in the prior thread. Are you using the genome from UCSC, if you are using th…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
by
1769mkc
★ 1.3k
"DRAGEN uses a newer method employing hashtables" you mean the reference builder?
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
李经纬
• 0
I use `vg construct --region chrom:start-end` to restrict graph to a chromosome region.
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
李经纬
• 0
I have tried to index various chromosome sets. - chrom1 only: `Memory usage: 2.53022 GB`. - chrom1-10: `Memory usage: 13.3299 GB`. - c…
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