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121,908 results • Page
44 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
300
views
Variant Calling Issue
SV
SNV
updated 8 months ago by
GenoMax
153k • written 8 months ago by
Nai
▴ 50
0
votes
1
reply
467
views
Trimming smRNA seq adaptors
trimming
smallRNA
SMATerKit
updated 8 months ago by
GenoMax
153k • written 8 months ago by
Matar
• 0
2
votes
7
replies
2.3k
views
I encountered a problem while installing packager 'ChIPseeker'
ChIPseeker
curl
BiocManager
updated 8 months ago by
Ram
45k • written 8 months ago by
Pallondyle
• 0
6
votes
5
replies
1.6k
views
background genes for gene ontology analysis
gsea
DESeq2
fgsea
updated 8 months ago by
ATpoint
89k • written 8 months ago by
adi.gershon1
▴ 10
1
vote
1
reply
724
views
Biomart doesn't output ALL uniprot IDs
biomart
Uniprot
updated 8 months ago by
i.sudbery
22k • written 8 months ago by
sgupt46
• 0
0
votes
0
replies
498
views
ChromHMM - annotation of chromatin states
ChromHMM
8 months ago by
Bioinformatics_16
• 0
5
votes
2
replies
1.9k
views
Nextflow: how to filter a channel by a list? (DLS2)
dsl2
nextflow
updated 8 months ago by
nyoungb2
▴ 10 • written 2.2 years ago by
lacb
▴ 120
0
votes
5
replies
1.1k
views
How to filter INFO field of VCF by 'OR' using bcftools
filtering
bcftools
vcf
updated 8 months ago by
Pierre Lindenbaum
166k • written 8 months ago by
adixon3
• 0
0
votes
0
replies
450
views
Does the order of HTOs matter?
hashsolo
scanpy
8 months ago by
bioinfo
▴ 160
0
votes
3
replies
1.2k
views
Sample-level demultiplex raw FASTQ file
drop-seq
demultiplex
rna-seq
single-cell
updated 8 months ago by
dsull
★ 7.7k • written 8 months ago by
Bhavya
• 0
0
votes
0
replies
412
views
Will Plink and GCTA match and reorder sample order?
Plink
GCTA
updated 8 months ago by
Ram
45k • written 8 months ago by
Mian
• 0
0
votes
0
replies
534
views
News:
Only 2 Seats Left: Landscape Genomics Workshop in Poland (20–24 January 2025)
SNPs
Local-Adaptation
GIS
Landscape-Genomics
updated 8 months ago by
Ram
45k • written 8 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
591
views
R Circlize Genomics
SNP
barplot
histogram
Count
updated 8 months ago by
GenoMax
153k • written 8 months ago by
chimerajit
• 0
7
votes
6
replies
1.6k
views
6 follow
Genome Contamination Analysis
contamination
genome
assembly
analysis
updated 8 months ago by
lieven.sterck
15k • written 8 months ago by
SomeOne
▴ 240
0
votes
0
replies
483
views
XWAS quality control
xwas
quality-control
updated 8 months ago by
Ram
45k • written 8 months ago by
renjunling2020
• 0
0
votes
2
replies
787
views
Annotating Multiple Sentences with Gene Entities Using PubTator
Pubtator
annotation
Text
NER
8 months ago by
dolphin-sea
• 0
3
votes
3
replies
1.1k
views
How to determine n and c terminal nucleotide bases from fasta sequences via R or bash scripting?
terminal
FASTA
N
C
updated 8 months ago by
Mensur Dlakic
★ 30k • written 8 months ago by
prithvi.mastermind
▴ 60
0
votes
0
replies
660
views
GEMMA GWAS Analysis: Covariate Formatting and Encoding Best Practices
GWAS
GEMMA
Formatting
Covariate
8 months ago by
Patrick
• 0
5
votes
6
replies
1.6k
views
Add sequential number to a specific row
r
updated 8 months ago by
zx8754
12k • written 9 months ago by
f.m.1994
▴ 10
3
votes
1
reply
704
views
java.lang.UnsupportedClassVersionError
java
picard
gatk
updated 8 months ago by
Ram
45k • written 8 months ago by
ali.kian.saei
▴ 10
0
votes
2
replies
1.3k
views
Converting VCF to BEAGLE format
bcftools
variant
snp
beagle
vcf
8 months ago by
diversitree
▴ 10
0
votes
2
replies
998
views
Subtypes from bulk RNA-seq to scRNA-seq
NMF
scRNA-seq
TCGA
8 months ago by
tujuchuanli
▴ 130
1
vote
5
replies
1.2k
views
MHV_A59 featureCounts
featureCounts
RNASeq
MHVA59
updated 8 months ago by
GenoMax
153k • written 8 months ago by
rajdeepboral00
▴ 70
1
vote
2
replies
1.2k
views
PanSN naming issue in pggb fastas
PanSN
pggb
updated 8 months ago by
colindaven
7.9k • written 8 months ago by
Whirlingdaf
▴ 60
0
votes
5
replies
2.3k
views
cellranger error fix GTF
gtf
cellranger
scRNA-seq
8 months ago by
marco.barr
▴ 180
0
votes
0
replies
509
views
Radar plot from IREA (Immune response enrichment analysis)
IREA
8 months ago by
Biostars2200
• 0
0
votes
2
replies
1.0k
views
"Unable to establish SSL connection" error for downloadin in wsl ubuntu by wget
ubuntu
wget
ssl
HISAT2
linux
8 months ago by
ali.kian.saei
▴ 10
0
votes
1
reply
770
views
making a circos for snps indels and SV
circos
updated 8 months ago by
Bastien Hervé
6.5k • written 8 months ago by
analyst
▴ 70
0
votes
3
replies
1.7k
views
Compute P-Values for SNP Fst from Pairwise Fst Calculations (--weir-fst-pop)
SNP
Analysis
Calculation
Pairwise
VCFtools
Fst
P-value
Calculations
updated 8 months ago by
Jorge Amigo
14k • written 8 months ago by
Armin
▴ 10
0
votes
4
replies
1.4k
views
chip seq data visualization
macs2
bamcompare
bdgcomp
deeptools
chip-seq
8 months ago by
nswati106
• 0
0
votes
0
replies
428
views
ssGSEA & WGCNA workflow approach
ssGSEA
WGCNA
8 months ago by
TNF_alpha
• 0
4
votes
4
replies
1.4k
views
Create the correct contrast in limma when want to combine 2 or more groups
contrast
limma
DEA
updated 8 months ago by
Gordon Smyth
★ 8.3k • written 8 months ago by
Lila M
★ 1.3k
4
votes
5
replies
1.3k
views
cant import VCF into OneMap, read.vcfR works but onemap_read_vcfR doesn't
R
onemap
vcf
vcfR
8 months ago by
dimeresia
▴ 10
6
votes
7
replies
1.7k
views
cellxgene DNA Methylation data
cellxgene
updated 6 months ago by
LChart
5.1k • written 8 months ago by
1769mkc
★ 1.3k
3
votes
7
replies
1.8k
views
How to check for adapters?
Adapters
trimmomatic
ngs
updated 8 months ago by
Darked89
4.7k • written 8 months ago by
Luna
• 0
0
votes
2
replies
678
views
TCGA miRNA data query
tcga
mirna
8 months ago by
jain72744
▴ 10
0
votes
0
replies
407
views
TCGA -LIHC Isoform Expression Data
isoform
tcga
8 months ago by
jain72744
▴ 10
2
votes
1
reply
1.4k
views
is there any possible way I can tell whether the presence of more bands in the elutions are because of insufficient washing or truncated/degraded pro…
protein
purification
offtopic
updated 8 months ago by
GenoMax
153k • written 8 months ago by
mohammed
• 0
0
votes
1
reply
563
views
MFE in RNA structure
RNA
updated 8 months ago by
Mensur Dlakic
★ 30k • written 8 months ago by
Ebtihal
• 0
0
votes
1
reply
790
views
nf-core/sarek pipeline : adding genome index in config file
nf-core
config
memory
variantcalling
sarek
updated 8 months ago by
Maxime Garcia
▴ 410 • written 8 months ago by
ashaneev07
▴ 50
1
vote
1
reply
637
views
N content - Sequence Quality
fastp
fastq
preprocessing
WGS
updated 8 months ago by
GenoMax
153k • written 8 months ago by
j.k3096
▴ 20
1
vote
1
reply
679
views
Seeking Explanation for the "Secondbest" Method in Gene log2FC Calculations with CRISPR Data in MAGeCK
CRISPR
log2FC
analysis
mageck
gene
updated 8 months ago by
ATpoint
89k • written 8 months ago by
yanbinwan
• 0
0
votes
1
reply
967
views
What is the proper output for a psiclass_vote.gtf file, and how does one add gene names and strand to gtf files?
psiclass
RNA-seq
8 months ago by
DdogBoss
▴ 20
0
votes
4
replies
1.4k
views
Commands for processing mixed 4-sample scRNA-seq data with cellranger
Cellranger
scRNA-seq
Chromium
8 months ago by
Apprentice
▴ 190
0
votes
0
replies
914
views
Forum:
Survey: Exploring RNA Data Quality in Genomics
Quality
Interpretation
Sequencing
Survey
RNA
8 months ago by
chrisk
• 0
15
votes
14
replies
6.4k
views
8 follow
Forum:
New Macbook M4 laptops (Pro vs Max)
Pro
Max
Mac
RNA-Seq
M4
updated 6 weeks ago by
GenoMax
153k • written 8 months ago by
tommygoe
▴ 10
0
votes
2
replies
879
views
miRBase is down
miRBase
8 months ago by
tyron.chang
• 0
0
votes
0
replies
712
views
miRNA-seq Analysis: Is a low percentage of assigned reads normal when using a miRBase gff file for counting
miRNA
Counting
RNAseq
8 months ago by
Sib
▴ 80
0
votes
1
reply
1.0k
views
Sample-wise raw count matrix from 10x multiplexed data
cellranger
soupx
singlecellRNASeq
10X
updated 11 weeks ago by
kkohl
• 0 • written 8 months ago by
AB
▴ 390
3
votes
1
reply
721
views
How to Test Statistical Association Between Clusters and Conditions in scRNA-seq Data?
scRNA-seq
updated 8 months ago by
jared.andrews07
★ 19k • written 8 months ago by
fifty_fifty
▴ 90
121,908 results • Page
44 of 2439
Recent Votes
Live Online course: Bioinformatic tools for transcriptomic data, Oct 2025
Tried building a compact sequence format with 4-bit storage
Comment: Tried building a compact sequence format with 4-bit storage
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
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Physalia-courses
★ 2.6k
Popular Question
to
soledad.esteban
▴ 10
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alison.ludzki
• 0
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Pranava
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npb27
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Recent Replies
Comment: Tried building a compact sequence format with 4-bit storage
by
Pranava
▴ 10
I see, but the reason I was planning on using a 4bit system is so that there wouldn't be too much data loss but thank you for the suggesti…
Comment: Splice junctions plots for long-read seq data
by
alison.ludzki
• 0
Thank you! I will check out miso!
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I did subsample the data to 30x coverage. I did run hifiasm on it, the log file did show some contents, but hifiasm ended again, stating th…
Comment: Tried building a compact sequence format with 4-bit storage
by
Alex Reynolds
36k
Using four bits for storage won't beat 2bit, of course, but direct access to a sequence of interest sounds interesting and useful and might…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
Panos
★ 1.8k
Why don't you subsample your HiFi reads and try running hifiasm again? Maybe this will help if you have memory problems. However, I haven't…
Comment: Is total miRNA in EV constant? Implications for library size normalization.
by
Gordon Smyth
★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage
by
Pranava
▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage
by
Matthias Zepper
5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio)
by
GenoMax
153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions
by
GenoMax
153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest
by
piffelpaff
• 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads
by
YuZJ
• 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq
by
acvill
▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads
by
Buffo
★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads
by
GenoMax
153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
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