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116,879 results • Page
5 of 2338
Sort: Rank
Rank
Views
Votes
Replies
1
vote
7
replies
464
views
Downsampling long-read BAM files
nanopore
BAM
QC
ONT
downsampling
8 days ago by
eebloom
▴ 80
3
votes
3
replies
346
views
What analysis suitable to identify similarly expressed genes between two samples (treated vs untreated). Contrary to DGE analysis,
Gene-Expression
RNA
NOISeq
DGE
updated 8 days ago by
ATpoint
82k • written 9 days ago by
alifafiq1
• 0
0
votes
0
replies
104
views
Use of annotation of integrated Seurat object in single sample
Seurat
9 days ago by
Bine
▴ 60
0
votes
0
replies
111
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 9 days ago by
Ram
43k • written 9 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
236
views
Subsetting and merging back Seurat Object brings different results
Seurat
9 days ago by
Bine
▴ 60
0
votes
0
replies
159
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
NGS
Genomics
Post-doc
R-loops
updated 9 days ago by
Ram
43k • written 9 days ago by
4r-rtg
• 0
1
vote
1
reply
148
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 9 days ago by
Ram
43k • written 9 days ago by
marco.barr
▴ 100
0
votes
0
replies
100
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
9 days ago by
Vijith
▴ 30
10
votes
14
replies
680
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 4 days ago by
GenoMax
142k • written 10 days ago by
nicole.kavanagh
• 0
0
votes
1
reply
287
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
updated 9 days ago by
Scooter
▴ 280 • written 16 days ago by
avocado123
• 0
0
votes
0
replies
105
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
9 days ago by
James
▴ 10
0
votes
1
reply
595
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 9 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
1
vote
3
replies
256
views
Odd alignment question/finding
Alignment
updated 8 days ago by
barslmn
★ 2.1k • written 9 days ago by
poordumbsillyidiot
• 0
0
votes
1
reply
217
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 9 days ago by
GenoMax
142k • written 9 days ago by
mgranada3
▴ 30
0
votes
0
replies
111
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
updated 18 hours ago by
GenoMax
142k • written 9 days ago by
meck
• 0
0
votes
0
replies
131
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 9 days ago by
Ram
43k • written 9 days ago by
Oscar
▴ 10
0
votes
7
replies
584
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 8 days ago by
LChart
3.9k • written 12 days ago by
kl
▴ 10
0
votes
1
reply
233
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 9 days ago by
Adam
▴ 30 • written 10 days ago by
J
• 0
1
vote
3
replies
325
views
DESeq2 processing problems
deseq2
R
updated 9 days ago by
ATpoint
82k • written 10 days ago by
jagdish7921
• 0
0
votes
1
reply
788
views
cnetplot category names are too long
clusterprofiler
RNA-Seq
enrichplot
cnetplot
updated 9 days ago by
Ram
43k • written 2.7 years ago by
carov
• 0
0
votes
1
reply
162
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 9 days ago by
Ram
43k • written 10 days ago by
ernestine.kubi
• 0
0
votes
0
replies
111
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
10 days ago by
VITALA
• 0
1
vote
2
replies
269
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
9 days ago by
rianna.collins
• 0
0
votes
1
reply
196
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 10 days ago by
i.sudbery
19k • written 10 days ago by
Edmond
• 0
0
votes
0
replies
154
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
10 days ago by
O.rka
▴ 720
0
votes
1
reply
693
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 10 days ago by
Ram
43k • written 10 days ago by
Dr Huma Naz
• 0
2
votes
2
replies
292
views
p-value in CIBERSORT
CIBERSORT
p-value
10 days ago by
michelafrancesconi9
▴ 20
0
votes
5
replies
402
views
Telescope issue
Telescope
RNA-seq
updated 10 days ago by
GenoMax
142k • written 10 days ago by
eleven11
• 0
5
votes
6
replies
551
views
Programmatically retrieving positions of protein active site residues
Uniprot
PDB
Proteins
updated 11 days ago by
me
▴ 760 • written 12 days ago by
Mariana
▴ 40
1
vote
1
reply
244
views
Adjust pvalue in R with different approach give me all different outcome
statistics
R
p-value
updated 10 days ago by
Ram
43k • written 11 days ago by
Jonathan Yoou
▴ 60
1
vote
2
replies
309
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
10 days ago by
Nafi
• 0
1
vote
3
replies
303
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 10 days ago by
GenoMax
142k • written 11 days ago by
jeffrey.maurer.informatics
• 0
1
vote
3
replies
297
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
5 days ago by
Dora
▴ 10
0
votes
0
replies
172
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 11 days ago by
Ram
43k • written 11 days ago by
Chakri
• 0
0
votes
2
replies
238
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
4 days ago by
Ahiad Chen Zion
• 0
1
vote
5
replies
350
views
Introduce SNPs on FASTA
simulation
snps
haplotypes
pharmacogenetics
8 days ago by
Riccardo
▴ 10
0
votes
0
replies
137
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 11 days ago by
Ram
43k • written 11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
131
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 11 days ago by
Ram
43k • written 11 days ago by
Alexandros
• 0
0
votes
1
reply
179
views
unable to get feature count results
featureCounts
updated 11 days ago by
Ram
43k • written 11 days ago by
Ravita
• 0
0
votes
3
replies
304
views
KEGG Pathways
r
RNA-seq
updated 10 days ago by
Ram
43k • written 11 days ago by
Sudip
• 0
4
votes
6
replies
3.9k
views
Taking the difference of two VCFs (or removing singletons)
genome
sequencing
singleton
SNP
filter
updated 11 days ago by
Andres
▴ 20 • written 9.6 years ago by
hermathena
▴ 40
0
votes
0
replies
137
views
Seurat object reductions (PCA, UMAP,..) after subsetting data
Seurat
11 days ago by
Bine
▴ 60
0
votes
1
reply
300
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
11 days ago by
David Langenberger
11k
0
votes
1
reply
200
views
Deseq2
Deseq2
updated 11 days ago by
Jack Tierney
▴ 360 • written 11 days ago by
Sudip
• 0
1
vote
1
reply
248
views
Polishing genome assembly
polishing
Nanopore
PacBio
updated 11 days ago by
Michael
54k • written 11 days ago by
Lissa Cruz Saavedra
• 0
5
votes
3
replies
299
views
6 follow
Integrate transcriptomic data and proteomics data.
OMICS
updated 11 days ago by
Lluís R.
★ 1.2k • written 11 days ago by
이민경[학생](대학원 융합의과학과)
• 0
2
votes
2
replies
209
views
MA plot of shrunken fold change
MA-plot
Deseq2
updated 11 days ago by
ATpoint
82k • written 11 days ago by
Sudip
• 0
1
vote
2
replies
233
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 11 days ago by
Ram
43k • written 11 days ago by
Ravita
• 0
3
votes
3
replies
242
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
4 days ago by
Adyasha
• 0
0
votes
0
replies
118
views
human gut metagenome taxonomy profile table and KO profile table from big cohort
metagenome
gut
human
11 days ago by
fanglujing
▴ 60
116,879 results • Page
5 of 2338
Recent Votes
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Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
Comment: Genome Assembly task + Protein Translation, assignment advice on a question
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Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
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161k
cross posted: https://stackoverflow.com/questions/78462732/ > Please mind that posting the same question to multiple sites can be perceive…
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Answer: Failed to open VCF file
by
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161k
> Error: Failed to open vcf file Fixing: No such file or directory one of your file is missing, obviously. Check files exist using `[…
Comment: Align paired and unpaired reads simultaneously using Bowtie2?
by
Ruqaiya
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I have forward reads that didn't require any trimming except for adapter sequence. but the reverse read file required trimming so i trimmed…
Comment: Trimmomatic: What is the difference between paired and unpaired output files in
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Ruqaiya
• 0
can we not mention unpaired ? i have a reverse read file that needs a lot of trimming but forward file is usable. I don't understand how to…
Comment: Genome Assembly task + Protein Translation, assignment advice on a question
by
rackbersingh
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I've found this code [in this site :][1] . It doesn't seem like they've shared any additional information about this in the previous line…
Comment: Correlation Analysis
by
Researcher
▴ 30
Thank you so much. I ran based on the above code and found that all gene columns have the same values, which you obtain as the average corr…
Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
use bcftools merge with --force-samples and then use jvarkit https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ to replace the no-call …
Answer: In IGV is this a heterogeneous mutation or false call?
by
swbarnes2
14k
Since all the reads that show the alternate allele have to be clipped to align there, I'd say those reads are misaligned. I would say that…
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
> Here's a few lines from the head of the raw fastq If your files are actually compressed (as their names suggest) then you should not be …
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
If you added the `\` before the `+` then there is no need for it. It makes it appear that the sequences are not in proper fastq format. Ple…
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
Mensur Dlakic
★ 27k
This seems to be the same unanswered question as before, except that its description is split over two threads. You are now forcing us to r…
Answer: what is another word for a BLAST "hit"?
by
dec986
▴ 380
I'll probably go with "matches" even though it doesn't sound as good as just "hit"
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