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121,515 results • Page
582 of 2431
Sort: Rank
Rank
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Votes
Replies
2
votes
1
reply
1.8k
views
How to load Seurat Object into WGCNA Tutorial Format
seurat
wgcna
3.9 years ago by
ksaunders73
▴ 10
0
votes
0
replies
691
views
Universal Human Reference RNA Sample
RNA
updated 2.3 years ago by
Ram
45k • written 3.9 years ago by
kstangline
▴ 80
4
votes
5
replies
2.2k
views
Calculate fold change in edgeR with one sample per condition
R
edgeR
expression
rna-seq
differential
3.9 years ago by
mohammedtoufiq91
▴ 260
8
votes
6
replies
6.5k
views
How to convert log2 scale RNA-Seq expression data to linear scale data
expression
edgeR
R
rna-seq
fold-change
updated 3.9 years ago by
rpolicastro
13k • written 3.9 years ago by
mohammedtoufiq91
▴ 260
0
votes
2
replies
1.9k
views
Circos plot with logfold change RNA seq data
circos
updated 2.3 years ago by
Ram
45k • written 3.9 years ago by
aranyak111
• 0
3
votes
9
replies
2.9k
views
DESeq2 design
coldata
DSeseq2
featureCounts
design
DESeqDataSetFromMatrix
3.9 years ago by
Rajesh
▴ 10
1
vote
0
replies
777
views
what's the criteria to select true-positive miRNAs predicted by miRDEEP2?
miRDEEP2
true-positive
criteria
3.9 years ago by
weixuchu63
▴ 10
1
vote
3
replies
1.2k
views
About runing Pilon on individual chromosomes when polish draft genome assembly
Pilon
chromosome
polish
genome
draft
updated 13 months ago by
san96
▴ 190 • written 3.9 years ago by
boymin2020
▴ 80
1
vote
5
replies
2.6k
views
how to combine either Rna-seq datasets or results from analysis of Rna-seq datasets to get a visual result
RNA-Seq
next-gen-sequencing
updated 3.0 years ago by
Ram
45k • written 3.9 years ago by
ashwing.kofficial
▴ 10
0
votes
4
replies
3.2k
views
BLAST masking
masking
database
blastp
3.9 years ago by
timothy.kirkwood
▴ 140
1
vote
2
replies
1.2k
views
WGS bacterial metagenomic pipeline - group comparison
metagenomics
WGS
pipeline
bacterial
3.9 years ago by
predeus
★ 2.1k
1
vote
7
replies
2.9k
views
Difficulty Using FastX Toolkit on Mac
mac
unix
ngs
fastx
executable
updated 3.9 years ago by
ATpoint
88k • written 3.9 years ago by
mfrenkel
• 0
0
votes
0
replies
611
views
Metadata for splice variant VCF
VCF
Splice
Variant
3.9 years ago by
Varun
• 0
0
votes
7
replies
2.7k
views
FreeBayes VCF output with FORMAT unknown
VCF
FreeBayes
unknown
FORMAT
3.9 years ago by
Michal Nevo
▴ 140
0
votes
2
replies
2.4k
views
When importing my quant.sf files into R using tximport, should I set 'ignoreTxVersion' to True or False?
Salmon
RNA-Seq
tximport
R
updated 3.9 years ago by
jaro.slamecka
▴ 270 • written 3.9 years ago by
robeaumont
• 0
0
votes
0
replies
1.0k
views
Annotation Forge Error: makeOrgPackageFromNCBI
annotation
forge
3.9 years ago by
Trinh
• 0
0
votes
2
replies
1.9k
views
Calculate TPM values from DESeq2 normalised counts
RNA-Seq
3.9 years ago by
James Cook
• 0
0
votes
0
replies
802
views
Plotting curves from multi-state models using survminer
survminer
survival
multi-state
analysis
models
3.9 years ago by
Kamran
• 0
1
vote
2
replies
1.2k
views
Convert gff3 (or .out file) in RepeatMasker into tbl format
RepeatMasker
gff3
tbl
3.9 years ago by
katak
• 0
0
votes
0
replies
692
views
hjust in geom_cladelab not working properly
geom_cladelab
R
ggtree
3.9 years ago by
Søren
• 0
1
vote
1
reply
913
views
Conda has been installed - but can't be found file
install
terminal
miniconda
not
conda
found
updated 3.9 years ago by
ATpoint
88k • written 3.9 years ago by
biology.may20
▴ 20
0
votes
0
replies
1.6k
views
Problems with R (protect() -> stackoverflow)
random
RStudio
forest
3.9 years ago by
Esra
• 0
1
vote
4
replies
2.3k
views
Can I sort my bam files with Picard MergeSamFiles?
MergeSamFiles
picard-tools
SortSam
updated 3.9 years ago by
predeus
★ 2.1k • written 3.9 years ago by
jonas.andersson
▴ 40
0
votes
2
replies
1.3k
views
VEP output is only protein_coding
VEP
3.9 years ago by
storm1907
▴ 30
0
votes
0
replies
774
views
Mapping reads and quantifying genes - Metagenomic workshop
metagenome
3.9 years ago by
arshad1292
▴ 110
3
votes
1
reply
1.0k
views
Extract log2FC values from volcanoplot() possible?
volcanoplot
R
limma
updated 3.9 years ago by
Gordon Smyth
★ 8.2k • written 3.9 years ago by
appropiate
▴ 80
0
votes
6
replies
11k
views
How to change the default font in ggplot 2
font
ggplot2
Arial
3.9 years ago by
camillab.
▴ 160
2
votes
3
replies
1.3k
views
Rscript match
data.frame
SNP
R
3.9 years ago by
priyanka
▴ 20
1
vote
0
replies
796
views
Fisher exact test for transcription factor binding motif enrichment analysis
motif
p-value
denovo
R
3.9 years ago by
Rana Rehan
▴ 10
0
votes
1
reply
3.9k
views
haplotype network analysis with Pegas package in R
haplotype
pegas
R
updated 3.9 years ago by
pmc.sa
▴ 40 • written 5.2 years ago by
Ana
▴ 200
8
votes
6
replies
2.0k
views
bash script
info
snp
model
substring
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
priyanka
▴ 20
2
votes
2
replies
1.2k
views
Forum:
Internship in research
python
genomics
3.9 years ago by
vaishnavi
▴ 80
0
votes
0
replies
1.4k
views
A USER ERROR has occurred: no positional argument is defined for this tool.
GATK4
HaplotypeCaller
BAM
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
taniamahmood38
▴ 60
4
votes
1
reply
1.3k
views
adjusting for confounding factors in Spearman correlation?
sapply
spearman
r
updated 3.9 years ago by
Papyrus
★ 3.1k • written 3.9 years ago by
diogo.moraes
▴ 20
4
votes
2
replies
1.1k
views
What aa should I use in 2nd structure prediction instead of X
structure
protein
prediction
3.8 years ago by
Xylanaser
▴ 80
3
votes
3
replies
1.2k
views
problem in y axis in barplot+ggplot
barplot
ggplot
3.9 years ago by
hasani.iut6
▴ 60
2
votes
0
replies
819
views
Precomputed TCGA MC3 tumor purity data
TCGA
3.9 years ago by
Yu
▴ 140
1
vote
2
replies
1.2k
views
Single-cell RNA Seq on whole organ or whole tissue with known cell origins
known-cell-origin
whole-organ
single-cell-RNA-Seq
whole-tissue
3.9 years ago by
zhang.jianhai
▴ 30
0
votes
0
replies
993
views
Job:
Postdoctoral Scientist in Statistical Bioinformatics, WEHI, Melbourne, Australia
australia
3.9 years ago by
Gordon Smyth
★ 8.2k
0
votes
0
replies
543
views
merging the co-expression networks from different tissue in one disease
RNA-seq
networks
expression
Merging
3.9 years ago by
sheikhbeigali
• 0
1
vote
1
reply
972
views
FreeBayes Error
Galaxy
Coursera
FreeBayes
Polymorphisms
updated 3.9 years ago by
Jianyu
▴ 580 • written 3.9 years ago by
Julia
• 0
0
votes
2
replies
1.7k
views
Removal of host sequences without reference genome
meta-genomic
contaminants
missing
host
reference
genome
viral
3.9 years ago by
emiliomastriani
▴ 40
0
votes
0
replies
1.3k
views
REditools2 (HPC-reditools) de-novo editing prediction from RNAseq?
editing
reditools2
prediction
RNAseq
3.9 years ago by
RNAseqer
▴ 280
1
vote
2
replies
3.9k
views
FindMarkers for ClusterProfiler
ClusterProfiler
gseGO
enrichGO
3.9 years ago by
cgp09741
▴ 10
0
votes
5
replies
2.6k
views
PLINK --lasso Issue ('Warning: No Phenotypes Present') even with a covar file is present
PLINK
updated 2.3 years ago by
Ram
45k • written 3.9 years ago by
ErickW
• 0
2
votes
3
replies
6.5k
views
Seurat re-clustering a cell subset but cell identity numbers are not completely showing up
scRNA
3.9 years ago by
leranwangcs
▴ 150
0
votes
0
replies
600
views
snsplot in Rshiny through images using reticulate
renderImage
reticulate
rshiny
R
3.9 years ago by
vinishavvenugopal
▴ 30
1
vote
3
replies
1.8k
views
Validation of somatic variant calling pipeline
calling
somatic
validation
variant
updated 3.9 years ago by
Jeremy Leipzig
23k • written 3.9 years ago by
Elisa
• 0
1
vote
1
reply
893
views
BSgenomes for HIV viruses
CLIP-seq
RNA-Seq
CLIP-Seq
updated 3.9 years ago by
ATpoint
88k • written 3.9 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
605
views
Network MJ mitochondrial SNPs
mitochondrial
SNPs
network
Median-joining
3.9 years ago by
pmc.sa
▴ 40
121,515 results • Page
582 of 2431
Recent Votes
The Biostar Herald for Thursday, May 22, 2025
DESeq2 analysis: huge number of outliers and refitting
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Answer: UCSC genome browser negative strand positions
Comment: UCSC genome browser negative strand positions
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No outliers. Very clear hidden variable that hasn't been accounted for. voomLmFit will give same results here as edgeR.
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To generate a covariate file, you can use your UK Biobank metadata files. These files contain information about the samples, including sex …
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Thanks, I will work on that more soon. Someone said that you could simply count CAG repeats on the genome browser of Nebula from certain …
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Would this be related to some function that takes the "end" as the start for negative strand features? E.g. Exon1: chr1 100 500 E…
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