4.1 years ago by
raalsuwaidi
▴
110
1
vote
2
replies
936
views
0
votes
0
replies
709
views
2
votes
1
reply
970
views
updated 4.1 years ago by
chrchang523
11k
•
written 4.2 years ago by
YL
▴
10
2
votes
4
replies
1.3k
views
4.1 years ago by
ccc
▴
30
0
votes
0
replies
840
views
2
votes
2
replies
1.2k
views
4.1 years ago by
seb.boegel
•
0
0
votes
0
replies
590
views
0
votes
4
replies
1.9k
views
1
vote
1
reply
838
views
updated 2.8 years ago by
Ram
45k
•
written 4.2 years ago by
upendrakumar.devisetty
▴
400
2
votes
6
replies
2.6k
views
updated 4.2 years ago by
Ram
45k
•
written 4.2 years ago by
Bioinformatics1
▴
10
0
votes
0
replies
649
views
0
votes
3
replies
1.2k
views
0
votes
6
replies
2.8k
views
0
votes
0
replies
738
views
updated 4.2 years ago by
Ram
45k
•
written 4.2 years ago by
timothy.kirkwood
▴
140
0
votes
0
replies
1.1k
views
0
votes
1
reply
1.1k
views
1
vote
12
replies
2.5k
views
1
vote
2
replies
1.4k
views
updated 4.2 years ago by
Mensur Dlakic
★
29k
•
written 4.2 years ago by
Taylor
•
0
1
vote
1
reply
1.6k
views
updated 2.2 years ago by
sure
▴
110
•
written 4.2 years ago by
cocchi.e89
▴
290
0
votes
0
replies
667
views
0
votes
7
replies
2.0k
views
0
votes
4
replies
1.6k
views
2
votes
4
replies
1.6k
views
updated 4.2 years ago by
Istvan Albert
103k
•
written 4.2 years ago by
ziziqolo
▴
10
2
votes
3
replies
2.9k
views
2.4 years ago by
Juke34
9.3k
3
votes
4
replies
2.6k
views
4.2 years ago by
roger.huerlimann
▴
10
1
vote
4
replies
1.8k
views
1
vote
2
replies
1.1k
views
4
votes
2
replies
1.5k
views
0
votes
0
replies
1.7k
views
4.2 years ago by
recruitment
▴
20
4
votes
6
replies
4.7k
views
0
votes
0
replies
912
views
0
votes
0
replies
829
views
4.2 years ago by
raalsuwaidi
▴
110
0
votes
0
replies
634
views
5
votes
3
replies
1.3k
views
0
votes
0
replies
829
views
2
votes
4
replies
1.8k
views
updated 4.2 years ago by
Emily
24k
•
written 4.2 years ago by
lincaijin1994
▴
50
0
votes
2
replies
1.0k
views
0
votes
0
replies
1.1k
views
0
votes
0
replies
697
views
4.2 years ago by
James Sacco
▴
10
0
votes
0
replies
596
views
0
votes
1
reply
1.2k
views
1
vote
0
replies
816
views
0
votes
1
reply
844
views
updated 4.2 years ago by
Ram
45k
•
written 4.2 years ago by
evafinegan
•
0
1
vote
1
reply
1.7k
views
8
votes
18
replies
6.4k
views
9 follow
4
votes
4
replies
4.2k
views
1
vote
8
replies
1.8k
views
1
vote
2
replies
1.2k
views
0
votes
0
replies
493
views
0
votes
0
replies
551
views
Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
UCLA, 24 minutes ago
London, UK, 30 minutes ago
United States, 54 minutes ago
United States, 1 hour ago
Russian Federation, 1 hour ago
United States, 1 hour ago
Recent Awards •
All
Popular Question to
dce1ee77
•
0
Popular Question to
Jeremy
▴
930
Popular Question to
Pratik
★
1.1k
Commentator to
ATpoint
89k
Popular Question to
firestar
★
1.7k
Popular Question to
AMARU
•
0
Supporter to
Aleksandra
▴
130
Recent Replies
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
李经纬
•
0
Thank you. Even if I build the XG index after some modifications, the building of gcsa failed even on a single chromosome. Even though I h…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★
29k
For posterity, here is `nvidia-smi` output for our cluster:
```
+-------------------------------------------------------------------------…
Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★
29k
How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here.
…
Comment: DiffBind error when calling dba.count
by
Irene
•
0
I am having the same issue with the same situation, so i do not understand what could be the problem...i do not know if you finally figure …
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Pierre Lindenbaum
166k
@genomax I'm using the 'GPU' queue of my cluster (SLURM). The very same config was used with another parabrick subtool and I got not probl…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
GenoMax
153k
Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
Comment: Statistical test of difference between two conditions and account for the batch
by
ATpoint
89k
Are the batches biological replicates?
Comment: how to start
by
shelkmike
★
1.7k
If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
Answer: how to start
by
shelkmike
★
1.7k
I would recommend, in the following order:<br>
1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
Bastien Hervé
6.4k
For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq.
I had…
Answer: how to start
by
yura.grabovska
▴
820
* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc.
* Look at the methods of papers…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
ATpoint
89k
"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
Comment: High percentage of intronic/intergenic reads in RNA-seq
by
i.sudbery
22k
I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
Bastien Hervé
6.4k
As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
Traffic: 2070 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6