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Recent Replies
Comment: How to deal with intermediate files
by
GenoMax
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> One simpler way that is closer is for example to mount the locations on our HPC to my laptop and hence not having to transfer anything
A…
Comment: How to deal with intermediate files
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ramiro.barrantes
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Thank you!! I am aware of all of those, however, they are not exactly what I am looking for: I could transfer data from one place to anothe…
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Thanks, @patrickdm! Let me give it a shot.
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Hello, I'd try tweaking the [Affine Gap Scores][1] of Align.PairwiseAligner(), and if those are not good enough, consider the possibilty to…
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Fair point about the sensitivity of data. I don't work on human or other particularly sensitive data so never really thought about it.
Comment: How to deal with intermediate files
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Great list. Globus may be the perfect option, if it is already installed on HPC.
Something to consider before using any of the above. Not…
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> StrainA_genome.fasta
Is this a publicly available reference genome (preferably RefSeq version) for your organism (strain)? Have you comp…
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There are a bunch of options, and I've seen a lot of different methods over the years. Here are a few of the common ones I've seen/used:
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There is a lot of useful information in the mmCIF file headers that can be relevant. Each method will have slightly different information a…
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Hi you can check this youtube video : [rna seq analysis][1]
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Hello, for the annotation you could try [Prokka][1] using the option --kingdom Mitochondria (--gcode 5).
Hth.
[1]: https://github.com/t…
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`.command.run: line 304: docker: command not found`: You need either to install the software by yourself, or to let Nextflow download them …
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Hello, you will find informations on dnadiff's output in its documentation's [README][1]; also notice that
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