0
votes
1
reply
71
views
7
votes
7
replies
2.8k
views
updated 1 day ago by
Damianos P. Melidis
▴
40
•
written 6.5 years ago by
DanielC
▴
190
0
votes
2
replies
231
views
837
votes
170
replies
178k
views
112 follow
updated 4 weeks ago by
Biostar
3.6k
•
written 8.5 years ago by
Istvan Albert
102k
0
votes
0
replies
116
views
0
votes
0
replies
104
views
0
votes
0
replies
463
views
updated 1 day ago by
GenoMax
151k
•
written 1 day ago by
salma.sarker
•
0
0
votes
0
replies
123
views
1 day ago by
xinguok794
•
0
1
vote
1
reply
402
views
updated 2 days ago by
LChart
4.9k
•
written 3 days ago by
anita.szabo08
▴
10
0
votes
2
replies
233
views
0
votes
3
replies
230
views
0
votes
1
reply
227
views
0
votes
1
reply
210
views
0
votes
1
reply
180
views
1
vote
3
replies
260
views
updated 2 days ago by
shelkmike
★
1.6k
•
written 2 days ago by
synthiiihuh
•
0
0
votes
1
reply
213
views
updated 2 days ago by
GenoMax
151k
•
written 2 days ago by
gil.hornung
▴
100
2
votes
4
replies
318
views
0
votes
2
replies
231
views
0
votes
1
reply
199
views
0
votes
1
reply
388
views
3
votes
1
reply
198
views
2
votes
4
replies
339
views
updated 1 day ago by
Gordon Smyth
★
8.1k
•
written 3 days ago by
Nasim Gandomdoust
•
0
7
votes
3
replies
329
views
updated 2 days ago by
jared.andrews07
★
18k
•
written 3 days ago by
txema.heredia
▴
240
0
votes
0
replies
147
views
3 days ago by
Physalia-courses
★
2.6k
2
votes
3
replies
331
views
7
votes
12
replies
669
views
0
votes
12
replies
957
views
0
votes
0
replies
153
views
2
votes
3
replies
402
views
updated 3 days ago by
dariober
15k
•
written 5 days ago by
Matteo Ungaro
▴
120
3
votes
1
reply
310
views
0
votes
1
reply
204
views
updated 3 days ago by
GenoMax
151k
•
written 4 days ago by
nmannda148
•
0
4
votes
1
reply
241
views
0
votes
4
replies
372
views
4
votes
6
replies
474
views
0
votes
0
replies
183
views
4 days ago by
mickley413
•
0
1
vote
10
replies
2.1k
views
2
votes
4
replies
645
views
1
vote
2
replies
308
views
1
vote
2
replies
309
views
2 days ago by
yura.grabovska
▴
780
0
votes
0
replies
210
views
4 days ago by
Physalia-courses
★
2.6k
2
votes
5
replies
455
views
updated 3 days ago by
GenoMax
151k
•
written 5 days ago by
Assa Yeroslaviz
★
1.9k
3
votes
5
replies
511
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 6 days ago by
shevch2009
▴
20
0
votes
2
replies
337
views
5 days ago by
khp35
•
0
0
votes
0
replies
223
views
0
votes
1
reply
316
views
0
votes
0
replies
230
views
6
votes
3
replies
377
views
0
votes
1
reply
283
views
updated 5 days ago by
Pierre Lindenbaum
166k
•
written 5 days ago by
María José
▴
10
4
votes
7
replies
3.7k
views
updated 5 days ago by
Joel Wallenius
▴
220
•
written 4.9 years ago by
AR
•
0
2
votes
8
replies
728
views
2 days ago by
AIMAR
▴
10
Recent Votes
Recent Locations •
All
Australia, 17 minutes ago
United Kingdom, 27 minutes ago
India, 36 minutes ago
UK, 36 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 50 minutes ago
Rome, 1 hour ago
Bangkok, 1 hour ago
Recent Awards •
All
Popular Question to
eebloom
▴
90
Teacher to
colindaven
7.5k
Popular Question to
Aki
▴
20
Popular Question to
Physalia-courses
★
2.6k
Popular Question to
Pierre Lindenbaum
166k
Popular Question to
Wenhai
•
0
Recent Replies
Comment: Decision making on choosing the based on tblastn result
by
GenoMax
151k
What is your aim here? Asking the right question will ensure that you get the correct answer.
Query coverage is important. Other hits may …
Comment: VCF2MAF structural variant file issue.
by
eebloom
▴
90
I have the same issue, did you find a solution?
Comment: de novo chromosome level assembly
by
colindaven
7.5k
Look at Ragtag on github, assuming you have a close reference to align against. Else your main option is spending more on Hi-C data. Else m…
Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
by
Asan Emirsale
•
0
the `dorado` does remove adapters for only 10.4.1 etc data. If you have data from r9.4.1, you should activate `---trim` flag.
I suggest al…
Comment: de novo chromosome level assembly
by
mthm
▴
80
I suppose the first one, since I don't have the information of the real chromosome
Answer: How to Identify the pathogenicity of a set of variants (by using ACMG guidelines
by
Damianos P. Melidis
▴
40
Dear DK,
Don't know if you are still interested in bioinformatics tools to implement ACMG but if you do let me share this biostars [post…
Comment: ACMG assignment tools
by
Damianos P. Melidis
▴
40
Hey, just to update with more tools:
- the wonderful* [TAPES][1]
- [vaRHC][2]
- [auto-acmg][3]
- genotoscope (see mark at the end)
Please…
Comment: Mass-spectrometry proteomics
by
Gordon Smyth
★
8.1k
limpa shares the full capabilities of the limma package, which includes adjustment for batch effects and outliers. To adjust for batch effe…
Comment: Why am I getting the exact same MarkDuplicates results when passing a query or
by
curious
▴
890
There are no secondary alignments as per :
samtools -f 0x100 {my_bam}
I only get secondary alignments if I add the `-a` flag to bwa …
Comment: Assemblers for short read bacterial isolates data
by
Mensur Dlakic
★
29k
Binning can be done in seconds, and there is no harm in trying it. If you run CheckM analyses before and after binning, it should give you …
Comment: Why am I getting the exact same MarkDuplicates results when passing a query or
by
GenoMax
151k
Can you provide the actual metrics output?
> What could be causing this?
Perhaps your data has no secondary/supplementary alignments.
Al…
Comment: Unsure whether or not I overcorrected for batch effect in dataset
by
Megan
▴
50
Thank you so much for the suggestion. I have included my code in the post.
Comment: Primer removal in amplicon sequencing
by
GenoMax
151k
`DADA2` pipeline states that all non-biological nucleotides need to be removed so choose accordingly: https://benjjneb.github.io/dada2/tuto…
Comment: Mass-spectrometry proteomics
by
Nasim Gandomdoust
•
0
Thank you for your reply. I would like to know if the package can handle batch effects and outlier samples too.
Answer: Which GWAS tool to use that can work on Czech cases and British controls, on a b
by
LChart
4.9k
There is really no way for you to do this analysis - having cases and controls perfectly confounded by populations means that every variant…
Traffic: 1813 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6