Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
194 results • Page
4 of 4
Sort: Rank
Rank
Views
Votes
Replies
0
votes
5
replies
327
views
How to convert normalized BigWig file to count matrix?
count-matrix
BigWig
3 days ago by
feather-W
• 0
0
votes
3
replies
295
views
bcftools - reducing to "sites-only"?
sites-only
bcftools
updated 6 days ago by
Pierre Lindenbaum
161k • written 7 days ago by
Matthew
• 0
0
votes
1
reply
153
views
input file for alternative splicing in rmats in linux
rmats
updated 6 days ago by
Ram
43k • written 6 days ago by
Lambodarswain316
• 0
2
votes
2
replies
241
views
Server or aws cloud- which one is better for gatk pipeline
aws
server
calling
gatk
cloud
updated 6 days ago by
Michael
54k • written 7 days ago by
ashaneev07
▴ 20
1
vote
1
reply
450
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 6 days ago by
Jaïr
• 0 • written 4 months ago by
NorbertK
▴ 10
4
votes
3
replies
2.9k
views
How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when run SamToFastq
samtofasq
picard
validatesamfile
updated 6 days ago by
Pierre Lindenbaum
161k • written 6 days ago by
Lila M
★ 1.2k
2
votes
3
replies
223
views
Nextflow: how to get the process work dir, within the process
nextflow
updated 6 days ago by
Pierre Lindenbaum
161k • written 6 days ago by
ScottDansk
▴ 10
1
vote
0
replies
139
views
What is Deepvariant default filtering values ?
vcf
calling
filter
variant
deepvariant
6 days ago by
Shae
▴ 10
0
votes
6
replies
2.1k
views
Copy number Variation analysis using conumee
R
software error
sequencing
genome
updated 6 days ago by
GenoMax
142k • written 3.2 years ago by
gs000095
▴ 10
1
vote
4
replies
334
views
Contig assembly task, errors
dna
genetics
contig
assembly
updated 2 days ago by
Ram
43k • written 7 days ago by
samRayne
• 0
1
vote
3
replies
255
views
Help with Biopython for Beginner
Python
ORF
FASTA
Biopython
updated 6 days ago by
GenoMax
142k • written 7 days ago by
cput
• 0
0
votes
2
replies
227
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
updated 3 days ago by
Zhenyu Zhang
★ 1.2k • written 7 days ago by
elisheva
▴ 120
4
votes
7
replies
472
views
RNA seq analysis
DESeq
RNA-seq
22 hours ago by
Jacek
▴ 10
0
votes
9
replies
577
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 16 hours ago by
Wayne
★ 2.0k • written 9 days ago by
JACKY
▴ 140
1
vote
9
replies
386
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 5 days ago by
i.sudbery
19k • written 8 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
4
replies
298
views
Correlation Analysis
statistics
methylation
NGS
expression
5 days ago by
Researcher
▴ 30
0
votes
1
reply
145
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Cancer-Research
ATAC-seq
updated 2 days ago by
Ram
43k • written 9 days ago by
David
• 0
0
votes
0
replies
107
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
6 days ago by
Javier
• 0
1
vote
7
replies
531
views
Question regarding WGCNA
WGCNA
Network-construction
6 days ago by
deepak
• 0
0
votes
3
replies
347
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
2 days ago by
mropri
▴ 150
3
votes
6
replies
482
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 3 days ago by
Pine
▴ 20 • written 10 days ago by
snajafy
• 0
2
votes
3
replies
329
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 6 days ago by
bk11
★ 2.4k • written 11 days ago by
Yoosef
▴ 60
0
votes
2
replies
269
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 5 days ago by
GenoMax
142k • written 12 days ago by
Ximena
• 0
0
votes
2
replies
294
views
Extracting mutation status from MAF files - TCGA
TCGA
maf
mutation
updated 3 days ago by
Zhenyu Zhang
★ 1.2k • written 12 days ago by
yahn
• 0
4
votes
7
replies
392
views
How does gene length effect the number of reads mapped
RNA-seq
CPM
sequencing
2 days ago by
Chen
• 0
3
votes
3
replies
262
views
Gene Specific coverage from WGS data
WGS
SARS-CoV2
updated 2 days ago by
Ram
43k • written 16 days ago by
Adyasha
• 0
0
votes
7
replies
413
views
RNAseq one control two conditions, shared and exclusive genes
conditions
RNAseq
multiple
Rstudio
updated 2 days ago by
Mohamed Abderrahmane
▴ 20 • written 16 days ago by
matteo.levorato
• 0
0
votes
0
replies
117
views
Comparing peptide sequences with MS/MS peptide data using MaxQuant
Transcriptomics
Mass-spectrometry
Proteins
updated 2 days ago by
Ram
43k • written 17 days ago by
atharvakarkare14
▴ 30
3
votes
3
replies
436
views
absolute path for symbolic links in Snakefile
Snakemake
updated 6 days ago by
Jesse
▴ 770 • written 26 days ago by
yifangt86
▴ 60
0
votes
0
replies
180
views
How to calculate correlation coefficient for chipseq?
chipseq
bigwigsummary
deeptools
correlation
2 days ago by
Emily
▴ 20
1
vote
4
replies
410
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 5 days ago by
GenoMax
142k • written 28 days ago by
aniigodwinn
• 0
1
vote
0
replies
176
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
6 days ago by
eebloom
▴ 80
2
votes
3
replies
269
views
Finding variants within a subset of a BAM file
variant
calling
1 day ago by
ramiro.barrantes
• 0
1
vote
4
replies
498
views
cellranger error message
multiplexing
cellranger
updated 5 days ago by
Max
• 0 • written 3 months ago by
Alivia
▴ 10
0
votes
9
replies
587
views
Using VEP annotation output as the input for a second VEP annotation
Annotation
VEP
VCF
10 hours ago by
Arton
▴ 10
4
votes
12
replies
4.9k
views
10 follow
How to analyze Infinium Mouse Methylation BeadChip array data?
Methylation
Experience
Illumina
Mouse
updated 6 days ago by
Tawny
▴ 180 • written 3.0 years ago by
julia_geh
▴ 20
9
votes
23
replies
9.8k
views
Tool:
BioLabDonkey - new Mac program for molecular biologists
software
biolabdonkey
4 days ago by
vytarasov
▴ 180
6
votes
5
replies
1.7k
views
How to calculate coverage of Nanopore long read data?
sequencing
coverage
1 day ago by
Arton
▴ 10
0
votes
3
replies
692
views
Pluritest for pluripotency broken
pluripotent
pluritest
cells
stem
updated 6 days ago by
DGTool
• 0 • written 21 months ago by
yassine
• 0
1
vote
2
replies
1.3k
views
Extracting named fasta sequences according to list with Biopython
Biopython
FASTA
updated 2 days ago by
Rubayetul
• 0 • written 2.6 years ago by
lachiemck
• 0
0
votes
4
replies
3.6k
views
SNPEff database building error
SNP
updated 2 days ago by
Fungal genetics
• 0 • written 7.1 years ago by
ntyagi654
• 0
2
votes
4
replies
5.6k
views
44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped reads with STAR
rna-seq
alignment
RNA-Seq
featureCounts
STAR
updated 2 days ago by
Thind amarinder
▴ 340 • written 4.9 years ago by
garbuzov
▴ 70
9
votes
13
replies
4.8k
views
Custom Reference panel creation for data imputation from .vcf files
imputation
reference panel
updated 5 days ago by
analyst
▴ 50 • written 6.4 years ago by
David_emir
▴ 490
6
votes
5
replies
2.3k
views
Tophat multiple or unique mapping criteria
RNA-Seq
updated 3 days ago by
Ruqaiya
• 0 • written 6.7 years ago by
maple964
• 0
194 results • Page
4 of 4
Recent Votes
Comment: PyWGCNA
PyWGCNA
Collect dispersed executable files and run them by using bingo.
A: ensembl gene id
A: How to deal with the case that one gene symbol matches multiple ensembl ids?
Answer: DESeq2 error
Answer: Using ggplotly in R
Recent Locations •
All
United Kingdom,
just now
Greece,
3 minutes ago
United States,
6 minutes ago
India,
8 minutes ago
France - Institut du Thorax,
9 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
10 minutes ago
United States,
11 minutes ago
Recent Awards •
All
Popular Question
to
sansan_96
▴ 90
Scholar
to
ramiro.barrantes
• 0
Popular Question
to
AshleeThomson
▴ 80
Popular Question
to
vk
▴ 10
Scholar
to
Prawesh
• 0
Popular Question
to
Jean-Karim Heriche
27k
Popular Question
to
Chironex
▴ 40
Recent Replies
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
they don't have clear answer for this problem. I run all subset of this data to find out error subsets database but it seem not any error i…
Comment: ggrepel function: geom_text_repel()
by
zx8754
11k
There is a dedicated package for this, see - https://bioconductor.org/packages/release/bioc/html/EnhancedVolcano.html
Comment: Sam file Header problem
by
Pierre Lindenbaum
161k
-R "@RG\tID:sample\tSM:sample\tPL:Illumina" where is this '@RG' in the header anyway ? are you sure you're handling the correct fil…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Pierre Lindenbaum
161k
it looks like the same error.
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thankyou so much Andres for your reply. I think I got your point, just have a couple of quick questions to make it more clear . 1) I do n…
Comment: Duplicated reads (IDs) from nanopore sequencing
by
njornet
▴ 20
I've looked into it and one of the reads with a supplementary alignment has the representative alignment aligning to the + strand and being…
Answer: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
by
kuttibiotech2009
▴ 30
Hello friends, Thank you for your feedback. I understand that the post may not directly relate to bioinformatics. My aim was to share …
Comment: how to treat the replicates while performing WGCNA
by
andres.firrincieli
3.6k
You do not merge the MEs. It is quite normal that some modules have noisy eigengenes (MEs); WGCNA is an unsupervised analysis overall. By …
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
my blast is latest version 2.15. I don't know what you want me to see in this link.
Answer: scRNAseq quality control weird double curve in nFeature vs nCount plot
by
valdirbarth
▴ 20
Is it possible that the cells that have their VDJ sequenced, those VDJ reads are not contributing to new genes detected? So you might be …
Comment: ggrepel function: geom_text_repel()
by
ntsopoul
▴ 60
The plot looks confusing, chek the documentation there is an attribute called force. If you reduce the value you should get better results.…
Comment: Sequencing Depth (Read Depth) Calculations
by
LucisTheFather
• 0
Understood! Gonna try those two!
Comment: Sequencing Depth (Read Depth) Calculations
by
LucisTheFather
• 0
Thank u very much!
Comment: How to extract cells of different species after mapping with combined genome?
by
GenoMax
142k
You have used the tag `snRNAseq`. I am not familiar with singleron tech but if you have sequence data you may be able to use `xenome` or `b…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
GenoMax
142k
It may be best to go back to the original data and then do `bbmerge.sh` on it to get original insert size estimates (before any operations …
Traffic: 2375 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6