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795 results • Page
3 of 16
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Votes
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0
votes
2
replies
175
views
chromosome location
visualization
updated 5 days ago by
Ram
40k • written 6 days ago by
Farzana
• 0
1
vote
3
replies
330
views
How to determine the total count for each gene in lymphotype B
scRNAseq
Seurat
4 days ago by
dalibenam64
• 0
0
votes
4
replies
282
views
Sequence quality drops in the 3' end of the left sequence in paired end. What could be the cause?
sequencing
updated 6 days ago by
GenoMax
134k • written 6 days ago by
eggrandio
▴ 40
15
votes
16
replies
804
views
ncbi error report log for validate fastq issue
sra-tools
updated 5 days ago by
GenoMax
134k • written 6 days ago by
1769mkc
★ 1.1k
1
vote
4
replies
257
views
Running Rockhopper from a command-line
rockhopper
java
6 days ago by
langziv
▴ 50
2
votes
4
replies
294
views
Which function is best for pathway analysis?
pathway
5 days ago by
Chris
▴ 200
0
votes
3
replies
191
views
Bug of vg surject
vg
updated 6 days ago by
Jordan M Eizenga
▴ 360 • written 6 days ago by
Qi
• 0
0
votes
1
reply
162
views
GO ENRICHMENT ANALYSIS- DESEQ
GO
updated 6 days ago by
Basti
★ 1.7k • written 6 days ago by
oduduabasi.isaiah
• 0
8
votes
6
replies
461
views
Low Alignment rate
alignment
low_alignment_rate
Bowtie2
updated 6 days ago by
dsull
★ 4.8k • written 8 days ago by
Mehwish
▴ 10
0
votes
6
replies
360
views
Bacterial Pangenome Analysis
Prokka
Pangenome
bacteria
Roary
5 days ago by
kirankumareripogu
▴ 10
0
votes
8
replies
460
views
Violin plot (Monocle 3) - Troubleshooting
Monocle3
updated 6 days ago by
Ram
40k • written 7 days ago by
seattlescientist_01
• 0
1
vote
8
replies
354
views
How to plot proportion of cells in each cluster with scanpy?
scRNA-seq
scanpy
single-cell
6 days ago by
bioinfo
▴ 110
0
votes
7
replies
400
views
Troubles launch IGV on Linux(Debian)
IGV
updated 5 days ago by
barslmn
★ 1.9k • written 6 days ago by
PoscaXVIII
• 0
0
votes
4
replies
256
views
Comparing multiple columns from two files using AWK
awk
updated 6 days ago by
Ram
40k • written 6 days ago by
emiliomastriani
▴ 30
0
votes
1
reply
146
views
DESeq2 error - converting result object into dataframe
R
DESeq2
Shiny
updated 6 days ago by
Ram
40k • written 6 days ago by
shasabhi1
• 0
0
votes
1
reply
142
views
Calculating haplotype and nucleotide diversity with deep amplicon sequencing data
haplotype
diversity
Pegas
Arlequin
HTS_data
6 days ago by
deorugz
• 0
3
votes
3
replies
2.2k
views
WGCNA Labeled Heatmap
heatmap
wgcna
updated 6 days ago by
Ram
40k • written 2.0 years ago by
Anand
▴ 40
0
votes
0
replies
107
views
How to remove chimera from 16S Sanger contigs
sanger-sequencing
chimera
uchime
updated 6 days ago by
Ram
40k • written 6 days ago by
eimanpharmacist
▴ 20
3
votes
0
replies
138
views
Herald:
The Biostar Herald for Tuesday, September 26, 2023
herald
6 days ago by
Biostar
2.0k
1
vote
5
replies
236
views
bcftools error merging two VCFs: REF prefixes differ
bcftools
VCF
6 days ago by
Shane
• 0
0
votes
1
reply
314
views
Gene enrichment analysis of prokaryotes gene
prokaryotes
GO
enrichment
DEG
updated 7 days ago by
dthorbur
▴ 560 • written 11 days ago by
Genta
• 0
0
votes
1
reply
155
views
GWAS phenotype
R
GWAS
phenotype
updated 7 days ago by
dthorbur
▴ 560 • written 7 days ago by
sooni
▴ 10
0
votes
2
replies
879
views
RSEM not giving .genes.results and isoforms.results ; Plase check if you provide correct parameters/options for the pipeline!
genomics
transcriptome
rsem
ngs
5 days ago by
kat.bi
• 0
0
votes
2
replies
212
views
how to create a loop in R
R
offtopic
updated 6 days ago by
Ram
40k • written 7 days ago by
mthm
▴ 50
0
votes
4
replies
220
views
BED files
BED
NGS
Chromosomes
updated 6 days ago by
Ram
40k • written 7 days ago by
adarsh_pp
▴ 30
5
votes
7
replies
346
views
How the first sequencing template removed in pair end sequencing
NGS
RNA-seq
WGS
sequence
updated 6 days ago by
GenoMax
134k • written 7 days ago by
octpus616
▴ 90
0
votes
4
replies
275
views
Saving the output of LD pruning from SNPRelate package as a new GDS file
LD-pruning
SNPRelate
updated 5 days ago by
DBScan
▴ 200 • written 7 days ago by
Patrick
• 0
0
votes
2
replies
489
views
Average Coverage after Assembly (Spades)
coverage
average
assembly
updated 7 days ago by
taniapsduarte
• 0 • written 13 months ago by
davidmaimoun
▴ 50
0
votes
5
replies
749
views
Can vg take MUMmer output as input?
vg
updated 6 days ago by
Ram
40k • written 2.8 years ago by
ac2278
▴ 20
2
votes
5
replies
1.9k
views
6 follow
Samtools Failing to Install through Conda
samtools
conda
updated 6 days ago by
Ram
40k • written 17 months ago by
jjp55
▴ 20
3
votes
11
replies
536
views
Should I Learn Docker to Run Command Line Bioinformatics Tool?
Docker
updated 10 hours ago by
Yogi
▴ 40 • written 7 days ago by
arriyaz.nstu
▴ 30
0
votes
1
reply
169
views
GO analysis after DESeq2
GO
updated 7 days ago by
Ram
40k • written 7 days ago by
oduduabasi.isaiah
• 0
3
votes
2
replies
204
views
Program for Overlapping DMRs (Differentially Methylated Regions) Between Groups
methylation
DMR
updated 7 days ago by
Basti
★ 1.7k • written 7 days ago by
epianalysis
• 0
0
votes
0
replies
113
views
News:
New NCBI Datasets APIs to Replace Old Ones
NCBI
API
Datasets
7 days ago by
PeterC_NCBI
▴ 330
1
vote
3
replies
252
views
miRDeep2 - identifying miRNAs from deep sequencing data
microRNA
miRDeep2
updated 7 days ago by
Ram
40k • written 7 days ago by
Hasan
• 0
3
votes
4
replies
231
views
Unable to build applet in DNAnexus, .jar file not found
dnanexus
applet
updated 7 days ago by
LChart
3.4k • written 7 days ago by
_quantum_girl_
▴ 10
1
vote
4
replies
296
views
geom_signif() uses t-test to compare between more than 3 groups... Isn't this wrong?
ggplot2
ANOVA
t-test
7 days ago by
RM123
▴ 10
0
votes
1
reply
153
views
Download an example of fully-imputed VCF files ?
VCF
impute
updated 7 days ago by
barslmn
★ 1.9k • written 7 days ago by
Ben
• 0
0
votes
1
reply
173
views
How to find the most representative protein data base ID for your protein?
modelling
protein
database
updated 7 days ago by
GenoMax
134k • written 8 days ago by
amy__
▴ 150
0
votes
2
replies
201
views
Visualize where kmers are on a reference genome
kmer
visualize
updated 7 days ago by
Alex Reynolds
35k • written 7 days ago by
Carrie
• 0
7
votes
7
replies
398
views
Filter human transcription factors
transcription-factor
RNA-seq
updated 6 days ago by
jared.andrews07
★ 15k • written 7 days ago by
Chris
▴ 200
2
votes
6
replies
319
views
obtaining circular RNAs' sequences from circBase
circular-RNA
5 days ago by
aminijavad4
▴ 10
0
votes
0
replies
126
views
How to annotate BED for tissue expression?
BED
annotation
7 days ago by
Fabio_bie88
• 0
2
votes
0
replies
167
views
Job:
Human Genomics Team Leader
ebi
ensembl
embl
genomics
7 days ago by
Ben_Ensembl
★ 2.3k
0
votes
1
reply
1.7k
views
error when running local chlorop1.1
chlorop
updated 7 days ago by
Ram
40k • written 7.3 years ago by
gerrychang1985
▴ 40
3
votes
14
replies
1.9k
views
10 follow
Help writing code for a question on my homework
biopython
updated 6 days ago by
Joe
21k • written 2.4 years ago by
hannahcheyenna
• 0
1
vote
1
reply
239
views
bedGraph for Coverage of Insert from Paired-End Data?
genome
awk
coverage
bed
paired-end
updated 7 days ago by
shelkmike
▴ 980 • written 10 days ago by
vanbelj
▴ 40
0
votes
6
replies
289
views
gene correlations in between two groups
gene-expression
correlation
6 days ago by
biology_inform
▴ 40
0
votes
1
reply
127
views
Running Ibex on both BCR chains?
BCR
ibex
single-cell
updated 7 days ago by
Ram
40k • written 8 days ago by
actinia94
• 0
2
votes
9
replies
509
views
Calculation of TMB on gene level
genomics
updated 6 days ago by
svp
▴ 590 • written 8 days ago by
smrutimayipanda
▴ 20
795 results • Page
3 of 16
Recent Votes
How To Write Data In A Granges Object To A Bed File.
Comment: Convert amino acid sequences into nucleotide sequences
Comment: Convert amino acid sequences into nucleotide sequences
Comment: Convert amino acid sequences into nucleotide sequences
Getting error in running rMATS
Bioinformatics short paper journal resource [software/webapps/database]
A: Bioinformatics short paper journal resource [software/webapps/database]
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134k
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Comment: Convert amino acid sequences into nucleotide sequences
by
Joe
21k
You will need to look at `seqkit`'s regex and other advanced matching tools in that case, since you can't use simple string matches. …
Comment: How can I compute energy from a protein PDB file?
by
Matthias Zepper
4.1k
Not at all my field of expertise, but the [AMBER package][1] is what we used in our protein bioinfo classroom exercise back in the day. I t…
Comment: Convert amino acid sequences into nucleotide sequences
by
sperezilvia
▴ 10
I have a problem. The SeqID from the nucleotide.fasta doesn't match with the SeqID from the protein.fasta because in the protein.fasta the …
Comment: How to plot coverage and depth statistics of a bam file
by
William
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Hi Jinli, It seems to be related to the pandas version you are using. Which version are you using? Try to install the latest version and s…
Comment: QC of genetic data
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kl
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Thanks for the advice. What about the third column (GS in plink). I am used to it being 0? And last question, what does it mean when there …
Comment: Is there any way i can determine the kit used for library preparation for whole
by
ATpoint
77k
You can align the data and then determine coverage over the exons, then checking which kit (based on what they promise to capture) it fits …
Comment: Installation: Tax4Fun2 package are not found and github repository is not mainta
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11k
https://github.com/ZihaoShu/Tax4Fun2 has tar file `Tax4Fun2_1.1.5.tar.gz`, download and [install from source](https://stackoverflow.com/q/…
Answer: Bioinformatics short paper journal resource [software/webapps/database]
by
Gennady Khvorykh
▴ 100
[NAR Genomics and Bioinformatics][1] also has Application Notes section for short (up to 3000 words) articles devoted to program, workflow,…
Comment: Bam sort merge error?
by
Pierre Lindenbaum
157k
it's just a log about : https://en.wikipedia.org/wiki/External_sorting and about https://en.wikipedia.org/wiki/Merge_sort
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DareDevil
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LR can be sensitive to the scale of your predictor variable. Since your gene expression values are all within a small range (between 8 and …
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Glad to hear!
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Fair enough
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Chris
▴ 200
Unfortunately, I got a new error: MemoryError: bam file #0 could not be sorted by cells. This is probably related to an ol…
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by
dsull
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kallisto relies on a transcriptome index, so simply add the GFP sequence to the transcriptome FASTA file and index it. The name in the outp…
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by
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40k
While `%>%` is indeed exported by magrittr, `dplyr` is the most popular package to use them. dplyr imports magrittr, it does not define the…
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