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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
5
votes
4
replies
163
views
Alignment of case vs. control from different origin
Alignment
RNAseq
updated 21 hours ago by
i.sudbery
17k • written 1 day ago by
sativus
• 0
0
votes
2
replies
227
views
Peaks annotation on bacterial genome
ChIPpeakAnno
annotation
bacteria
1 day ago by
Maurice
• 0
0
votes
1
reply
92
views
Create customized gene annotation file
reference-genome
cellranger
updated 20 hours ago by
Ram
39k • written 1 day ago by
rhonddaskl
• 0
0
votes
0
replies
69
views
metagenomics data - AMR genes
amr
resistome
resistance
ARG
metagenomics
1 day ago by
aziznasr1920
• 0
1
vote
3
replies
146
views
How to get a comperative result of 2 bed files?
bam
cnv
bed
updated 4 hours ago by
Pierre Lindenbaum
154k • written 1 day ago by
herh
• 0
0
votes
0
replies
64
views
1000G reference panel for LD clumping
LD
1 day ago by
en_keser
• 0
6
votes
25
replies
29k
views
14 follow
CluserProfiler message "No gene can be mapped"
R
updated 1 day ago by
13554221497
• 0 • written 5.2 years ago by
ARich
▴ 130
160
votes
63
replies
76k
views
38 follow
Selecting Random Pairs From Fastq?
random
fastq
illumina
sequence
updated 20 hours ago by
Ram
39k • written 12.2 years ago by
Ketil
4.1k
4
votes
5
replies
13k
views
Take A Subset Of A Fastq Paired-End Sample
paired-end
fastq
rna-seq
illumina
updated 20 hours ago by
Ram
39k • written 10.2 years ago by
dfernan
▴ 730
1
vote
2
replies
152
views
Forum:
Colleges
Colleges
india
universities
updated 20 hours ago by
Ram
39k • written 1 day ago by
mahimanepalli36
• 0
3
votes
5
replies
222
views
Concatenating text files based on common indices
Bash
Python
updated 20 hours ago by
Ram
39k • written 1 day ago by
Hau Tak Leighton
• 0
1
vote
8
replies
354
views
how to create correlation matrix R
pearson-correlation
R
3 hours ago by
satva72
• 0
0
votes
0
replies
77
views
Nucleotide alignments from mmseqs "tblastn"
mmseqs2
tblastn
mmseqs
1 day ago by
saladi
▴ 30
8
votes
5
replies
324
views
I don't want to believe the Interproscan DB estimated download time.
Interproscan
20 hours ago by
gh
• 0
2
votes
2
replies
269
views
What is the best way to clean bulk RNA-seq data?
normalization
TPM
r
updated 1 day ago by
swbarnes2
13k • written 2 days ago by
JACKY
▴ 100
0
votes
1
reply
172
views
Make a BedGraph file
BedGraph
RepeatMasker
BED
updated 1 day ago by
bhumm
▴ 40 • written 2 days ago by
kirillkirilenko
▴ 10
1
vote
7
replies
261
views
RNAseq Data and Pipeline
RNA-Seq
DESeq2
Differential-Gene-Expression
updated 1 day ago by
Ram
39k • written 1 day ago by
turcoa1
• 0
0
votes
2
replies
594
views
ERROR running Cuffmerge in reference based RNA-SEQ analysis?
cuffmerge
RNA-Seq
Cufflinks
updated 1 day ago by
Ram
39k • written 12 months ago by
Meeran
• 0
0
votes
7
replies
529
views
How to deal with duplicated gene IDs in TCGA RNA expression data?
TCGA
Expression
mRNA
updated 1 day ago by
Vincent Laufer
★ 2.8k • written 5 days ago by
Camilo Andres
▴ 30
0
votes
3
replies
175
views
How to make a dotplot for bulk RNA average expression ?
Dotplot
RNA-seq
updated 1 day ago by
bhumm
▴ 40 • written 1 day ago by
LionisOne
• 0
0
votes
3
replies
170
views
Dada2 in Qiime2: losing reads during merging
Qiime2
Chimer
Dada2
updated 20 hours ago by
andres.firrincieli
3.3k • written 1 day ago by
kamanovae
▴ 80
0
votes
1
reply
138
views
NCBI Common Taxonomy Tree
phylogenetic-tree
comparative-taxonomy
ncbi
updated 1 day ago by
GenoMax
129k • written 1 day ago by
fafad046
• 0
3
votes
6
replies
252
views
Salmon Index
transcriptomics
Bulk
RNA-sequencing
updated 1 day ago by
GenoMax
129k • written 1 day ago by
ashleymb1116
• 0
1
vote
4
replies
547
views
Expected number of haplotype IDs per path in PHG
PHG
updated 1 day ago by
Ram
39k • written 5 weeks ago by
twrl8
• 0
0
votes
3
replies
144
views
minimap's SAM file MAPQ value for the unique alignments
minimap
MAPQ
RNAseq
1 hour ago by
Mohd
• 0
0
votes
2
replies
139
views
sorting BAM file
BAM
updated 1 day ago by
ATpoint
72k • written 1 day ago by
Mohammad Amin
• 0
0
votes
1
reply
92
views
Search SRA metadata for Histological_Type and Body_Site
sra
updated 1 day ago by
GenoMax
129k • written 1 day ago by
oakhamwolf
▴ 20
2
votes
3
replies
210
views
NCBI refseq ids to uniprot ids
refseq
Uniprot
updated 1 day ago by
Ram
39k • written 2 days ago by
t.ali
• 0
1
vote
3
replies
140
views
Covert multiple short sequence into list of IUPAC motif
sequence
updated 1 day ago by
GenoMax
129k • written 1 day ago by
praasu
▴ 40
1
vote
0
replies
85
views
Resequencing data of pangenome
NGS
PanGenome
Resequence
updated 1 day ago by
Ram
39k • written 2 days ago by
bioinfo223
▴ 10
4
votes
2
replies
187
views
Graphing Average Expression of Group of Genes
Boxplot
R
updated 1 day ago by
Shred
★ 1.2k • written 2 days ago by
cthangav
▴ 40
0
votes
0
replies
73
views
Converting rds file to h5ad and saving raw counts as X
R
seurat
updated 2 days ago by
zx8754
11k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
1
reply
136
views
Seurat: How to get all genes name of a cell ?
seurat
updated 1 day ago by
jv
★ 1.2k • written 2 days ago by
Picasa
▴ 640
1
vote
0
replies
216
views
miRDeep2 installation showing "ln: failed to create symbolic link './randfold': File exists" error.
miRDeep2
updated 1 day ago by
Ram
39k • written 2 days ago by
Supernova
• 0
0
votes
0
replies
96
views
Bulk RNA sequencing time course pathway analysis progression visualization
time-course
RNA-seq
pathway
updated 1 day ago by
Ram
39k • written 2 days ago by
Fred
• 0
0
votes
1
reply
263
views
CORUM server not working?
corum
protein
complexes
database
updated 2 days ago by
Elisabeth Gasteiger
★ 2.2k • written 12 days ago by
marta
• 0
0
votes
0
replies
120
views
Job:
PhD students in Data Science - DTU Biosustain
PhD
Biology
Data-Science
updated 1 day ago by
Ram
39k • written 2 days ago by
info
▴ 70
0
votes
3
replies
242
views
1000G reference panel for LD
plink
gwas
LD
2 days ago by
en_keser
• 0
0
votes
1
reply
136
views
How to calculate SARS-2'S evolutionary rate
evolutionary-rate
updated 1 day ago by
Ram
39k • written 2 days ago by
chengc2016zzu
• 0
3
votes
4
replies
199
views
how to use nohup with parallel
parallel
nohup
updated 2 days ago by
GenoMax
129k • written 2 days ago by
gavin
• 0
1
vote
1
reply
130
views
How do I restrict to only hm3 SNPs for plink analyses?
plink
hm3
updated 2 days ago by
chrchang523
10k • written 2 days ago by
garrett.ennis
• 0
0
votes
0
replies
79
views
How to retrieve non-redundant restriction enzymes database from Rebase?
Rebase
Databases
enzymes
Restriction
2 days ago by
Mahmoud Reda
▴ 10
1
vote
2
replies
181
views
Converting RefSeq protein accession IDs into entreZ IDs
RNA-SEQ
1 day ago by
Pegasus
▴ 90
0
votes
0
replies
110
views
Merging multiple PLINK files
plink
merging
2 days ago by
Nejla
• 0
0
votes
6
replies
1.7k
views
Using entrez-direct inside a for loop in bash
NCBI
bash
updated 2 days ago by
GenoMax
129k • written 4.2 years ago by
Lille My
▴ 30
1
vote
2
replies
262
views
how to intersect multiple bed files and get results in uncollapsed genomic intervals
bedtools
bedops
intervals
genomic
intersect
1 day ago by
Alewa
▴ 110
0
votes
0
replies
111
views
References selected by ExomeDepth CNV
CNV
ExomeDepth
updated 2 days ago by
GenoMax
129k • written 2 days ago by
keiko.asakura
• 0
0
votes
3
replies
406
views
ABySS genome assembler
ABySS
genome
k-mers
assembly
updated 2 days ago by
shelkmike
▴ 920 • written 5 days ago by
npavliukovec
• 0
0
votes
1
reply
179
views
Perl. How to extract gene entry, CDS and gene sequence from a specified range from GenBank files?
fasta
sequence
GenBank
perl
14 hours ago by
Fungi-Beware!
• 0
0
votes
2
replies
211
views
BCR/TCR analysis using target capture sequencing data
capture
ngs
TCR
BCR
1 day ago by
J.F.Jiang
▴ 900
1,000 results • Page
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Comment: BioInformatics, Software
BioInformatics, Software
Answer: BioInformatics, Software
A: Bedtools Compare Multiple Bed Files?
Answer: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote
Answer: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote
Answer: Dot Plot using KEGG
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Teacher
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4.8k
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Recent Replies
Answer: BioInformatics, Software
by
Dr William Klubinski
▴ 30
**Galaxy** is very common but you cannot cluster data in Galaxy (i.e. Seurat or SC3 for clustering and dimensionality reduction), so you ma…
Answer: Single Cell Rna Seq Using BD Rhapsody
by
Dr William Klubinski
▴ 30
In general, the course of action should go as follows. Use FastQC to generate quality reports on your raw sequence data (Go to "NGS: QC and…
Comment: NarrowPeak format -Peak field
by
aaronlogsdon2001
• 0
Hi ATpoint - quick question. In my mind, 0-based means counting from 0. So if the peak value column shows 50, the summit is 52 (1 + 51), no…
Answer: BioInformatics, Software
by
colindaven
4.8k
https://training.galaxyproject.org/
Comment: Single Cell Rna Seq Using BD Rhapsody
by
dsull
★ 4.2k
I think a good solution would be kallisto/bustools (or other solutions that work, like STARsolo or alevin-fry). E.g. For kallisto/bustools…
Comment: DEGseq for multiple samples
by
Basti
★ 1.5k
logFC and p-values are results of a differential analysis between the groups, it does not exist in the context of individual samples
Comment: Dot Plot using KEGG
by
smanzano250800
• 0
Thank you, I tried first the other answer (rpolicastro).
Comment: Dot Plot using KEGG
by
smanzano250800
• 0
Thanks, I tried this and it works.
Answer: how to sort a fasta file
by
rpolicastro
12k
You can use seqkit. ``` seqkit sort -N in.fa ``` Alternatively if your sequences are indeed all just one line. ``` paste - - < in.fa | s…
Comment: how to run FacetsSuite wrapper scripts on command line
by
Dalal
• 0
Yes, the executable snp-pileup-wrapper.R is found in the path directory provided. pwd > /home/dalal/mut_analysis/variant-calling/face…
Comment: ggsave() bug in ggplot2?
by
barslmn
★ 1.5k
Oh, I meant the shell command `file` which shows the resolution and dpi of the image file. ,:)
Comment: minimap's SAM file MAPQ value for the unique alignments
by
Mohd
• 0
Hi, I am sequencing RNA of the GFP library, so I am mapping to GFP sequences (database having 5'UTR-CDS-barcodes_3'UTR of all the variants…
Comment: DEGseq for multiple samples
by
ALOUSH ALI
• 0
My question is about the output(differential gene expression analysis results) which contains results of logfoldchange and pvalues between …
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Medeea
• 0
>file("Figure1.jpg") A connection with description "Figure1.jpg" class "file" …
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by
Basti
★ 1.5k
Your post is badly formatted, you should enhance the presentation. I do not understand your question because you created geneExpMatrix1 and…
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