2 days ago by
Kevin Blighe
87k
76
votes
72
replies
19k
views
19 follow
8
votes
16
replies
814
views
5
votes
13
replies
1.2k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 6 days ago by
ATpoint
82k
•
written 7 days ago by
BioinfGuru
★
1.7k
0
votes
13
replies
3.5k
views
6 follow
updated 2 days ago by
drstalinantony28
•
0
•
written 2.2 years ago by
ymj
▴
10
0
votes
11
replies
486
views
19
votes
11
replies
14k
views
10 follow
4
votes
11
replies
529
views
25
votes
11
replies
3.7k
views
6 follow
Forum:
Site Use Guidelines
updated 3 days ago by
Ram
43k
•
written 14.6 years ago by
Istvan Albert
100k
1
vote
10
replies
918
views
2 days ago by
DKA
▴
40
3
votes
9
replies
433
views
updated 2 days ago by
Istvan Albert
100k
•
written 4 days ago by
Κοσμάς
•
0
2
votes
9
replies
826
views
0
votes
8
replies
321
views
4
votes
8
replies
387
views
1
vote
8
replies
777
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 8 days ago by
Maria
•
0
8
votes
8
replies
546
views
3
votes
8
replies
1.3k
views
7
votes
7
replies
5.9k
views
6 follow
updated 1 day ago by
rohitsatyam102
▴
850
•
written 6.1 years ago by
smallfish
▴
10
4
votes
7
replies
421
views
0
votes
7
replies
304
views
10
votes
6
replies
9.8k
views
6 follow
updated 18 hours ago by
Antonio R. Franco
★
5.1k
•
written 6.0 years ago by
williamsbrian5064
▴
510
0
votes
6
replies
310
views
2
votes
6
replies
3.6k
views
updated 1 day ago by
ATpoint
82k
•
written 3.9 years ago by
grayapply2009
▴
280
3
votes
6
replies
650
views
3
votes
6
replies
436
views
7 follow
updated 7 hours ago by
GenoMax
141k
•
written 3 days ago by
qudrat.nii
▴
10
7
votes
6
replies
474
views
5 days ago by
analyst
▴
30
0
votes
6
replies
431
views
2
votes
6
replies
1.8k
views
7 follow
2
votes
5
replies
452
views
1
vote
5
replies
329
views
3 days ago by
anasjamshed
▴
120
2
votes
5
replies
10k
views
0
votes
5
replies
300
views
3
votes
5
replies
548
views
2
votes
5
replies
282
views
1
vote
5
replies
273
views
updated 4 days ago by
Ram
43k
•
written 4 days ago by
marco.barr
▴
80
8
votes
5
replies
5.2k
views
1
vote
5
replies
265
views
updated 13 hours ago by
bk11
★
2.4k
•
written 1 day ago by
starswillfade
▴
10
2
votes
5
replies
522
views
updated 6 days ago by
Mensur Dlakic
★
27k
•
written 7 days ago by
Giorgio
•
0
0
votes
5
replies
297
views
updated 1 day ago by
GenoMax
141k
•
written 2 days ago by
Bertalan_Takacs
▴
90
0
votes
5
replies
5.9k
views
updated 6 days ago by
ndm1096
•
0
•
written 6.5 years ago by
ac.research
▴
30
3
votes
5
replies
267
views
updated 4 days ago by
GenoMax
141k
•
written 4 days ago by
ahmad.sajad4541
•
0
2
votes
5
replies
687
views
1
vote
5
replies
591
views
updated 3 days ago by
atowns21
•
0
•
written 3 months ago by
benjamin.pyenson
•
0
2
votes
4
replies
307
views
1
vote
4
replies
423
views
0
votes
4
replies
2.7k
views
updated 2 days ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
3
votes
4
replies
659
views
3
votes
4
replies
251
views
1 day ago by
QX
•
0
0
votes
4
replies
254
views
1 day ago by
sehriban.buyukkilic
▴
10
2
votes
4
replies
297
views
2
votes
4
replies
271
views
Recent Votes
Recent Locations •
All
India, 2 minutes ago
Russia, 7 minutes ago
Indonesia, 8 minutes ago
United States, 8 minutes ago
United States, 15 minutes ago
Seattle, WA USA, 30 minutes ago
Australia, 41 minutes ago
Recent Awards •
All
Scholar to
Alex Reynolds
35k
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Recent Replies
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
Gordon Smyth
★
7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler.
I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★
7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★
7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing
by
cao510927
▴
30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple:
```r
data <- lapply(files, read_tsv)
data <- Reduce(merge, data) # or Reduce(full_join, data)
```
<a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Hi,
Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Traffic: 1756 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6