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850
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Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
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the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
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I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
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For doing this, should I just look at the log.out.file?
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Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
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The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
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This is way easier to do solely in R now 10 years later.
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I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
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The updated code in R using rtracklayer for reading a gtf file.
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