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1,000 results • Page
4 of 20
Sort: Votes
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Views
Votes
Replies
4
votes
2
replies
1.7k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 8 days ago by
Dr.Animo
▴ 130 • written 12 months ago by
BioinfoBee
• 0
4
votes
9
replies
1.1k
views
Error in openning FastQC
fastqc
igv
updated 28 days ago by
GenoMax
141k • written 8 months ago by
huynhthienphai
• 0
4
votes
5
replies
350
views
merging tetraploid vcf files through bcftools
vcf
bcftools
24 days ago by
analyst
▴ 30
4
votes
6
replies
1.4k
views
CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRleFromGR(x, weight = weight, ignore.strand = ignore.strand): Seqlength…
gff3
GenomicRanges
ORFik
GenomicFeatures
updated 10 days ago by
GenoMax
141k • written 15 months ago by
Estefania
▴ 30
4
votes
2
replies
1.2k
views
Tool:
Introducing Cramino: a *fast* QC tool for long reads
long-read
nanopore
pacbio
updated 20 days ago by
Ram
43k • written 17 months ago by
WouterDeCoster
47k
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.2 years ago by
dvelmeshev
• 0
4
votes
4
replies
355
views
Bowtie2 mapping is slow
metagenomics
bowtie2
mapping
read
updated 13 days ago by
colindaven
6.4k • written 22 days ago by
Md Moinuddin
• 0
4
votes
4
replies
462
views
Error Codes in Snakemake
python
snakemake
20 days ago by
888pea
▴ 10
4
votes
6
replies
3.9k
views
Correcting for batch effect in RNA-seq data
RNA-Seq
batch-effect
updated 8 days ago by
Ram
43k • written 4.8 years ago by
Rimma
▴ 30
4
votes
4
replies
394
views
How do I install plink2 on a mac?
plink2
plink
updated 10 days ago by
zx8754
11k • written 13 days ago by
emilija.romic
▴ 10
4
votes
2
replies
278
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 9 days ago by
Ram
43k • written 9 days ago by
Adi
▴ 10
4
votes
11
replies
1.3k
views
Paired layout, but one fastq file
fastq
updated 28 days ago by
GenoMax
141k • written 13 months ago by
Andy
▴ 120
4
votes
5
replies
1.9k
views
which package should be selected for differential gene expression analysis
Differential-gene-expression
RNA-Seq
updated 16 days ago by
Ram
43k • written 5.5 years ago by
lkianmehr
▴ 100
4
votes
2
replies
3.8k
views
DESeq2 design and batch effect
RNA-Seq
batch-effect
DESeq2
Salmon
updated 7 days ago by
Ram
43k • written 6.5 years ago by
georgewwp
▴ 30
4
votes
6
replies
443
views
Odd results with BLAST remote
blast
remote
NCBI
updated 9 days ago by
b.contreras.moreira
▴ 170 • written 10 days ago by
Begonia_pavonina
▴ 150
4
votes
13
replies
864
views
RNAseq of primary tumor and metastases in two different organ
metastases
RNA-seq
DEG
R
updated 8 days ago by
BioinfGuru
★ 1.7k • written 14 days ago by
matteo.levorato
• 0
4
votes
9
replies
568
views
variant calling
variant-calling
updated 22 days ago by
Ram
43k • written 23 days ago by
dalibenam64
• 0
4
votes
11
replies
497
views
Redirection of Duplicate PMIDs
pubmed
pmid
updated 1 day ago by
LauferVA
4.2k • written 2 days ago by
dominickd
• 0
4
votes
5
replies
3.4k
views
Please clarify me about countOverlaps()?
RNA-Seq
countOverlaps
R
updated 8 days ago by
Ram
43k • written 6.3 years ago by
seta
★ 1.9k
4
votes
3
replies
10k
views
short and long reads
long-reads
Assembly
short-reads
updated 20 days ago by
Ram
43k • written 9.9 years ago by
midox
▴ 290
4
votes
2
replies
316
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 7 days ago by
Juke34
8.5k • written 7 days ago by
njornet
▴ 20
3
votes
4
replies
184
views
Why gatk VariantAnnotator required bam and coverage files
gatk
VariantAnnotator
5 hours ago by
QX
• 0
3
votes
1
reply
162
views
NCBI CLI Download all proteins from Taxid
ncbi
updated 23 days ago by
GenoMax
141k • written 23 days ago by
dthorbur
★ 1.9k
3
votes
1
reply
596
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 8 days ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
3
votes
5
replies
253
views
Per base sequence content error in RNAseq analysis
RNA-seq
analysis
updated 3 days ago by
GenoMax
141k • written 3 days ago by
ahmad.sajad4541
• 0
3
votes
4
replies
651
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
3 days ago by
rahu
• 0
3
votes
8
replies
471
views
PCA plot (Suggestions Needed)
DESeq2
PCAplot
updated 19 hours ago by
swbarnes2
14k • written 1 day ago by
Aaliya
▴ 10
3
votes
6
replies
892
views
Any problem re-using last year's RNA-Seq data in this year's analysis?
RNA-Seq
batch-effect
updated 9 days ago by
Ram
43k • written 3.7 years ago by
oakhamwolf
▴ 20
3
votes
11
replies
5.9k
views
Modifying R pairs() function
plotMEpairs
WGCNA
R
updated 8 days ago by
Ram
43k • written 6.4 years ago by
shania90.lk
▴ 30
3
votes
16
replies
2.7k
views
design matrix for dge
limma
differential-gene-expression
r
updated 16 days ago by
Ram
43k • written 7.9 years ago by
1234anjalianjali1234
▴ 50
3
votes
7
replies
457
views
Integration of transcriptomics and proteomics: difficult matching names
rna-seq
tmt
nomenclature
proteomics
9 days ago by
ntsopoul
▴ 60
3
votes
6
replies
8.3k
views
RNA-seq, EdgeR and batch effects
RNA-Seq
removeBatchEffect
edgeR
batch-effect
updated 8 days ago by
Ram
43k • written 9.3 years ago by
Ekarl2
▴ 120
3
votes
3
replies
189
views
Genbank vs SRA
ncbi
genbank
genomics
sra
updated 3 days ago by
Mensur Dlakic
★ 27k • written 3 days ago by
c_u
▴ 520
3
votes
6
replies
11k
views
List of species in RepeatMasker Tool (species parameter)
RepeatMasker
Masking
updated 9 days ago by
Bioinfotec
▴ 10 • written 7.6 years ago by
nut_B
▴ 10
3
votes
5
replies
1.4k
views
Removing Batch effect that is the same as condition - DESEq2
RNA-Seq
batch-effect
DESeq2
updated 17 days ago by
Ram
43k • written 3.9 years ago by
annamariabugaj
• 0
3
votes
3
replies
117
views
Sequence read length shorter than flow cell specification
illumina
NGS
sequencing
updated 2 hours ago by
swbarnes2
14k • written 8 hours ago by
M
• 0
3
votes
3
replies
334
views
Disrupting a gene interaction network
cytohubba
cytoscape
sequences
mRNA
14 days ago by
george
• 0
3
votes
3
replies
2.3k
views
How to make a TSS enrichment plot in ATAC-seq analysis?
ATAC
updated 10 hours ago by
sp
• 0 • written 22 months ago by
Dan
▴ 180
3
votes
6
replies
2.4k
views
How to adjust by multiple variables using ComBat-Seq?
CombatSeq
combat
rna-seq
sva
batch-effect
updated 9 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
3
votes
9
replies
790
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 7 days ago by
Elisabeth Gasteiger
★ 2.4k • written 7 days ago by
Jacky
• 0
3
votes
7
replies
518
views
Artificial deletion in bam
bam
updated 20 days ago by
Zhenyu Zhang
★ 1.2k • written 21 days ago by
enee
▴ 10
3
votes
2
replies
811
views
Retrieve initial query in getBM()
getBM
biomaRt
R
gene
updated 8 days ago by
Ram
43k • written 3.2 years ago by
helia.ziaei
• 0
3
votes
3
replies
776
views
GATK error on HPC clusters
variant-calling
SNP
updated 23 days ago by
Ram
43k • written 12 months ago by
princy149
• 0
3
votes
7
replies
1.0k
views
Can I use batch effect correction "by parts"?
ComBat
RNA-Seq
batch-effect
updated 8 days ago by
Ram
43k • written 4.3 years ago by
n,n
▴ 360
3
votes
2
replies
300
views
Seeking Guidance on How to Annotate Unusual Cell Populations in Single-Cell Data
Transcriptomics
Single-Cell
updated 20 days ago by
Ram
43k • written 7 weeks ago by
Daddy
▴ 20
3
votes
4
replies
3.4k
views
any recommended tools for batch effect and normalization not written in R?
R
RNA-Seq
combat
python
batch-effect
updated 7 days ago by
Ram
43k • written 7.1 years ago by
dyollluap
▴ 310
3
votes
3
replies
3.0k
views
Quick way to Identify batch effect from covariates?
bioconductor
batch-effect
updated 7 days ago by
Ram
43k • written 7.9 years ago by
James Ashmore
★ 3.4k
3
votes
3
replies
501
views
Korean human genome reference file
GWAS
reference
imputation
6 days ago by
SeoGyun
• 0
3
votes
1
reply
264
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 13 days ago by
Ram
43k • written 14 days ago by
rj.rezwan
• 0
3
votes
5
replies
538
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
3 days ago by
n_navy
• 0
1,000 results • Page
4 of 20
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