0
votes
0
replies
138
views
0
votes
0
replies
133
views
0
votes
0
replies
130
views
updated 5 days ago by
Ram
43k
•
written 6 days ago by
carlopecoraro2
★
2.5k
0
votes
4
replies
523
views
0
votes
2
replies
261
views
updated 5 days ago by
Ram
43k
•
written 6 days ago by
Matteo Ungaro
▴
100
7
votes
6
replies
469
views
5 days ago by
analyst
▴
30
1
vote
1
reply
257
views
updated 6 days ago by
Gordon Smyth
★
7.0k
•
written 6 days ago by
Bioinformatician
•
0
1
vote
0
replies
540
views
1
vote
1
reply
298
views
2
votes
5
replies
519
views
updated 5 days ago by
Mensur Dlakic
★
27k
•
written 6 days ago by
Giorgio
•
0
2
votes
1
reply
286
views
updated 6 days ago by
GenoMax
141k
•
written 7 days ago by
rebecca.calvo
•
0
0
votes
0
replies
212
views
2
votes
5
replies
685
views
3
votes
8
replies
1.2k
views
5
votes
13
replies
1.1k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 6 days ago by
ATpoint
82k
•
written 7 days ago by
BioinfGuru
★
1.7k
3
votes
4
replies
655
views
3
votes
3
replies
470
views
0
votes
0
replies
202
views
1
vote
1
reply
415
views
updated 5 days ago by
Gordon Smyth
★
7.0k
•
written 8 days ago by
Chris
▴
260
0
votes
0
replies
191
views
4 days ago by
Ben_Ensembl
★
2.4k
3
votes
6
replies
646
views
1
vote
2
replies
234
views
updated 4 days ago by
Gordon Smyth
★
7.0k
•
written 18 days ago by
Netanel
•
0
0
votes
6
replies
429
views
4
votes
2
replies
368
views
updated 20 hours ago by
shalespringer
•
0
•
written 11 weeks ago by
Phenylananin
▴
20
0
votes
2
replies
582
views
1
vote
5
replies
589
views
updated 3 days ago by
atowns21
•
0
•
written 3 months ago by
benjamin.pyenson
•
0
1
vote
4
replies
418
views
2
votes
3
replies
946
views
0
votes
0
replies
273
views
3
votes
3
replies
2.3k
views
2
votes
6
replies
3.6k
views
updated 1 day ago by
ATpoint
82k
•
written 3.9 years ago by
grayapply2009
▴
280
7
votes
7
replies
5.9k
views
6 follow
updated 1 day ago by
rohitsatyam102
▴
850
•
written 6.1 years ago by
smallfish
▴
10
25
votes
11
replies
3.7k
views
6 follow
Forum:
Site Use Guidelines
updated 3 days ago by
Ram
43k
•
written 14.6 years ago by
Istvan Albert
100k
10
votes
6
replies
9.8k
views
6 follow
updated 11 hours ago by
Antonio R. Franco
★
5.1k
•
written 6.0 years ago by
williamsbrian5064
▴
510
0
votes
5
replies
5.9k
views
updated 6 days ago by
ndm1096
•
0
•
written 6.5 years ago by
ac.research
▴
30
14
votes
2
replies
7.0k
views
updated 1 day ago by
Lissa Cruz Saavedra
•
0
•
written 7.3 years ago by
Rox
★
1.4k
2
votes
5
replies
10k
views
Recent Votes
Recent Locations •
All
United States, just now
United Kingdom, 1 minute ago
Chile, 3 minutes ago
United States, 4 minutes ago
United States, 4 minutes ago
Russia, 4 minutes ago
Seattle, WA USA, 4 minutes ago
Recent Awards •
All
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Recent Replies
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple:
```r
data <- lapply(files, read_tsv)
data <- Reduce(merge, data) # or Reduce(full_join, data)
```
<a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Hi,
Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Traffic: 2549 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6