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1,000 results • Page
5 of 20
Sort: Rank
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Views
Votes
Replies
0
votes
0
replies
205
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
5 days ago by
Javier
• 0
1
vote
4
replies
687
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 9 days ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
180
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
9 days ago by
enferdeflame
• 0
1
vote
1
reply
419
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 6 days ago by
Gordon Smyth
★ 7.0k • written 9 days ago by
Chris
▴ 260
0
votes
0
replies
190
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 9 days ago by
Ram
43k • written 9 days ago by
carlopecoraro2
★ 2.5k
3
votes
9
replies
805
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 9 days ago by
Elisabeth Gasteiger
★ 2.4k • written 9 days ago by
Jacky
• 0
0
votes
1
reply
269
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 9 days ago by
GenoMax
141k • written 9 days ago by
predeus
★ 1.9k
0
votes
1
reply
272
views
DEseq2
RNA-seq
DESeq2
updated 9 days ago by
Ram
43k • written 9 days ago by
rrehimi
• 0
0
votes
0
replies
176
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 9 days ago by
Ram
43k • written 9 days ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
322
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 9 days ago by
Juke34
8.5k • written 9 days ago by
njornet
▴ 20
1
vote
0
replies
177
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
9 days ago by
Novogene
▴ 420
0
votes
1
reply
401
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 9 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
3
votes
3
replies
510
views
Korean human genome reference file
GWAS
reference
imputation
8 days ago by
SeoGyun
• 0
0
votes
0
replies
160
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 9 days ago by
Ram
43k • written 9 days ago by
bioinfo223
▴ 10
0
votes
0
replies
176
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
9 days ago by
P.
• 0
0
votes
0
replies
168
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
9 days ago by
ekirsch
• 0
1
vote
1
reply
408
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
8 days ago by
renan.igor
• 0
2
votes
1
reply
264
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 9 days ago by
Ram
43k • written 9 days ago by
anasjamshed
▴ 120
3
votes
1
reply
597
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 9 days ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
179
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
9 days ago by
synat.keam
▴ 100
0
votes
1
reply
268
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 10 days ago by
GenoMax
141k • written 10 days ago by
ycts
• 0
5
votes
4
replies
634
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
9 days ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
276
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 10 days ago by
LChart
3.9k • written 10 days ago by
George
▴ 10
0
votes
4
replies
581
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
8 days ago by
Kai Xin
• 0
1
vote
1
reply
226
views
Retrieve a % coverage for each transcript
RNA-seq
updated 10 days ago by
Ram
43k • written 10 days ago by
jammydodger123456
▴ 40
0
votes
1
reply
343
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 10 days ago by
Klaus S
▴ 150 • written 15 days ago by
Zeng Hao
▴ 40
0
votes
2
replies
373
views
How can I solve this error?
metal
9 days ago by
22211020193
• 0
0
votes
0
replies
167
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 10 days ago by
GenoMax
141k • written 10 days ago by
srimmer
• 0
1
vote
2
replies
276
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 10 days ago by
Ram
43k • written 10 days ago by
aniigodwinn
• 0
2
votes
3
replies
421
views
Sheep reference genome remapping coordinates
reference
remap
sheep
coordinates
genome
9 days ago by
valentinatsar
• 0
2
votes
3
replies
316
views
Editing Human Reference Genome by adding a CDS
gff
agat
transcriptome
updated 10 days ago by
Michael
54k • written 10 days ago by
LDT
▴ 340
2
votes
10
replies
754
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 9 days ago by
GenoMax
141k • written 10 days ago by
me
• 0
2
votes
2
replies
376
views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression
edgeR
9 days ago by
nhaus
▴ 310
0
votes
0
replies
354
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
10 days ago by
Ronin
• 0
4
votes
2
replies
1.8k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 10 days ago by
Dr.Animo
▴ 130 • written 12 months ago by
BioinfoBee
• 0
2
votes
7
replies
826
views
Removing duplicates
duplicates
ONT
minimap2
updated 8 days ago by
noodle
▴ 520 • written 10 days ago by
quentinperriere
• 0
0
votes
1
reply
197
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 10 days ago by
DKA
▴ 40 • written 10 days ago by
james.melhorn
• 0
3
votes
4
replies
432
views
biomaRt error for different R version
biomaRt
R
updated 9 days ago by
GenoMax
141k • written 10 days ago by
manaswwm
▴ 490
0
votes
1
reply
189
views
Freyja plot error
Freyja
updated 10 days ago by
Ram
43k • written 10 days ago by
Adyasha
• 0
1
vote
2
replies
207
views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis
R
microarray
DExMA
combinedP
10 days ago by
hagl
▴ 10
0
votes
0
replies
157
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
10 days ago by
chemokine-1
▴ 10
0
votes
4
replies
507
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
9 days ago by
feather-W
• 0
0
votes
0
replies
245
views
Job:
Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes
DevOps
executor
AWS
Snakemake
updated 10 days ago by
Michael
54k • written 10 days ago by
jonrkarr
▴ 100
0
votes
2
replies
225
views
Bedmethyl file format
bedmethyl
methylation
updated 10 days ago by
GenoMax
141k • written 10 days ago by
njornet
▴ 20
0
votes
0
replies
168
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
10 days ago by
Ali
• 0
2
votes
4
replies
321
views
SnpEff annotates coding duplication as intronic?
snpeff
10 days ago by
kirill.zaslavsky
• 0
0
votes
2
replies
252
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
10 days ago by
mropri
▴ 150
5
votes
4
replies
2.8k
views
genefu for PAM50 prediction
RNA-Seq
breast cancer
subtyping
updated 10 days ago by
hamarillo
▴ 70 • written 5.7 years ago by
silviajserrano
▴ 50
3
votes
10
replies
615
views
Piping samtools to R
R
NGS
bash
samtools
10 days ago by
noodle
▴ 520
2
votes
2
replies
246
views
How to filter columns in a raw sparse matrix in R
matrix
R
updated 11 days ago by
bk11
★ 2.4k • written 11 days ago by
bgbs
• 0
1,000 results • Page
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Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
NGS forensics: how to know if data is fabricated
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Calculate Allele balance by sample
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
Answer: Is there a tool that sorts gtf files?
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My first question would be how strong your background in such analysis is. Claim of fabrication is very serious, so be 100% sure to back it…
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Use the standalone version of Nextflow and specify the process-specific conda environments paths.
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can you show us an exonic position in your VCF file that is all `./.`?
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just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed; before -p was sufficient to…
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features <- SelectIntegrationFeatures(object.list = merged_dat) data.anchors <- FindIntegrationAnchors(object.list = merged_dat, …
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They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
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