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1,000 results • Page
8 of 20
Sort: Rank
Rank
Views
Votes
Replies
3
votes
5
replies
356
views
Generating mpileup file using samtools
mpileup
samtools
updated 17 days ago by
Joe
21k • written 17 days ago by
Ruqaiya
• 0
0
votes
5
replies
459
views
6 follow
What purposes can TPM values be used for?
RNA-seq
TPM
Normalization
DESeq2
updated 17 days ago by
b.contreras.moreira
▴ 200 • written 18 days ago by
JH
• 0
1
vote
3
replies
331
views
Does comparing two different groups to a common third group introduce bias in the analysis?
DESEQ
RNAseq
updated 17 days ago by
ATpoint
82k • written 17 days ago by
Qi
• 0
0
votes
0
replies
150
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
17 days ago by
Amos Bairoch
▴ 120
2
votes
3
replies
339
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus
annotation
assembly
genome
updated 17 days ago by
dthorbur
★ 2.0k • written 17 days ago by
Vijith
▴ 30
0
votes
0
replies
164
views
SIngle cell analysis
Seurat
scRNA-seq
Harmony
DoubletFinder
Merge
17 days ago by
Jeyong
• 0
0
votes
2
replies
756
views
homer not configured properly
Homer
makeTagDirectory
updated 17 days ago by
clairechung112
• 0 • written 24 months ago by
amahdi779
• 0
1
vote
3
replies
333
views
Bedtools merge minimum overlap?
bedtools
genomics
updated 17 days ago by
Alex Reynolds
35k • written 18 days ago by
SJP
• 0
0
votes
0
replies
155
views
Empty table plot using plotGseaTable()
FGSEA
16 days ago by
Chris
▴ 280
0
votes
1
reply
224
views
VG : No reference-sense paths available in the graph; falling back to generic paths.
vg
updated 17 days ago by
anovak
▴ 120 • written 18 days ago by
Hang
• 0
1
vote
3
replies
299
views
DiffBind: no peaks in DBA
MACS2
DiffBind
ChIP-seq
updated 18 days ago by
jared.andrews07
★ 16k • written 18 days ago by
yvonneh
▴ 10
3
votes
5
replies
419
views
Converting CRAM to FastQ
GATK
samtools
cram
SamToFastq
fastq
17 days ago by
Maverick
▴ 10
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 18 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
252
views
Base Quality Score Recalibration with different reference genome
SNPs
GATK
BQSR
RNA-seq
18 days ago by
dtnondorf
• 0
3
votes
8
replies
734
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 14 days ago by
Chris Dean
▴ 410 • written 18 days ago by
sovrappensiero
▴ 100
1
vote
2
replies
286
views
RNA-seq data for deep learning classification
rna-seq
17 days ago by
yahn
• 0
3
votes
8
replies
641
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
14 days ago by
Qroid
▴ 40
0
votes
1
reply
555
views
Loss of 'var' using concatenation of AnnData objects
Scanpy
AnnData
updated 18 days ago by
Hugo
• 0 • written 5 months ago by
Rachel
• 0
0
votes
1
reply
192
views
Provean help
variant
Provean
updated 18 days ago by
Mensur Dlakic
★ 27k • written 18 days ago by
Arun Sai Kumar
• 0
1
vote
1
reply
197
views
Download eQTL data of one specific gene for all tissues from GTEx
eQTL
GTEx
updated 18 days ago by
bk11
★ 2.5k • written 18 days ago by
Jeol
▴ 20
4
votes
7
replies
438
views
How does gene length effect the number of reads mapped
RNA-seq
CPM
sequencing
6 days ago by
Chen
• 0
5
votes
5
replies
365
views
Problem with data downloaded from Short Reads Archive (SRA)
SRA
DADA2
metabarcoding
updated 18 days ago by
atharvakarkare14
▴ 40 • written 18 days ago by
Begonia_pavonina
▴ 150
1
vote
7
replies
521
views
Downsampling long-read BAM files
nanopore
BAM
QC
ONT
downsampling
17 days ago by
eebloom
▴ 80
3
votes
3
replies
388
views
What analysis suitable to identify similarly expressed genes between two samples (treated vs untreated). Contrary to DGE analysis,
Gene-Expression
RNA
NOISeq
DGE
updated 17 days ago by
ATpoint
82k • written 18 days ago by
alifafiq1
• 0
0
votes
0
replies
117
views
Use of annotation of integrated Seurat object in single sample
Seurat
18 days ago by
Bine
▴ 60
0
votes
0
replies
126
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 18 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
269
views
Subsetting and merging back Seurat Object brings different results
Seurat
18 days ago by
Bine
▴ 60
0
votes
0
replies
193
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
NGS
Genomics
Post-doc
R-loops
updated 18 days ago by
Ram
43k • written 18 days ago by
4r-rtg
• 0
1
vote
1
reply
174
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 18 days ago by
Ram
43k • written 18 days ago by
marco.barr
▴ 130
0
votes
0
replies
113
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
18 days ago by
Vijith
▴ 30
10
votes
14
replies
827
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 13 days ago by
GenoMax
142k • written 19 days ago by
nicole.kavanagh
• 0
0
votes
1
reply
301
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
updated 18 days ago by
Scooter
▴ 280 • written 25 days ago by
avocado123
• 0
0
votes
0
replies
119
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
18 days ago by
James
▴ 10
0
votes
1
reply
614
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 18 days ago by
mdav
• 0 • written 19 months ago by
Zoe
• 0
1
vote
3
replies
302
views
Odd alignment question/finding
Alignment
updated 17 days ago by
barslmn
★ 2.2k • written 18 days ago by
poordumbsillyidiot
• 0
0
votes
1
reply
241
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 18 days ago by
GenoMax
142k • written 18 days ago by
mgranada3
▴ 30
0
votes
0
replies
138
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 18 days ago by
Ram
43k • written 18 days ago by
Oscar
▴ 10
0
votes
7
replies
662
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 17 days ago by
LChart
3.9k • written 21 days ago by
kl
▴ 10
0
votes
1
reply
246
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 19 days ago by
Adam
▴ 30 • written 20 days ago by
J
• 0
1
vote
3
replies
365
views
DESeq2 processing problems
deseq2
R
updated 19 days ago by
ATpoint
82k • written 19 days ago by
jagdish7921
• 0
0
votes
1
reply
806
views
cnetplot category names are too long
clusterprofiler
RNA-Seq
enrichplot
cnetplot
updated 18 days ago by
Ram
43k • written 2.7 years ago by
carov
• 0
0
votes
1
reply
184
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 19 days ago by
Ram
43k • written 19 days ago by
ernestine.kubi
• 0
0
votes
0
replies
125
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
19 days ago by
VITALA
• 0
1
vote
2
replies
298
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
18 days ago by
rianna.collins
• 0
0
votes
1
reply
211
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 19 days ago by
i.sudbery
19k • written 19 days ago by
Edmond
• 0
0
votes
0
replies
166
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
19 days ago by
O.rka
▴ 720
0
votes
1
reply
709
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 19 days ago by
Ram
43k • written 19 days ago by
Dr Huma Naz
• 0
2
votes
2
replies
322
views
p-value in CIBERSORT
CIBERSORT
p-value
19 days ago by
michelafrancesconi9
▴ 20
0
votes
5
replies
439
views
Telescope issue
Telescope
RNA-seq
updated 19 days ago by
GenoMax
142k • written 20 days ago by
eleven11
• 0
5
votes
6
replies
614
views
Programmatically retrieving positions of protein active site residues
Uniprot
PDB
Proteins
updated 20 days ago by
me
▴ 760 • written 21 days ago by
Mariana
▴ 40
1,000 results • Page
8 of 20
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Please do a few simple Google searches before asking others for help.
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This is unhelpful and doesn't answer my question.
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