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Recent Replies
Comment: Microarray batch correction method suggestions
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ATpoint
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Makes no sense in my opinion. It's different experiments that cannot be quantitatively compared.
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scholaraspect2008
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by means of that, how should i write my scripting?
say i have
GCF000001
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btw sorry if i wasn't that clear with the …
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Thank you for your detailed answer. I will check the reads and compare them with chemistry manual as you suggested.
Thank you again for yo…
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Thank you @atpoint for your response. However, aim of analysing to generate a matrix with all dataset available after batch correction.
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Agreed. I would just force the cells to 5000 or so, and then proceed with the normal QC. If there's a lot of trash "cells" in the dataset t…
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you should use the `wild cards` to download all the given above GCF files. Moverover, you can use the commands of `curl` , `wget` and `slow…
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This has been asked so many times before. Analyse them separately, then make a statement on reproducibility of results using a meta-analysi…
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What is qcovhsp (high scoring segment pair) in BLAST output. Can we use this parameter to calculate the gene coverage?
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Scaling the data will give you Z-scores. This is a standard way of preparing data for PCA. I would also suggest trying a center-log-ratio…
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maybe try?:
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Looks like you have corrupt or improperly-formatted input. It's expecting to parse a floating-point number where the word "score" appears.…
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The knee plot is just one type of QC. I'd say just proceed with your analysis and see if you observe anything funky (analysis itself is a Q…
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