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17
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2
answers
1.0k
views
2
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Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 10 months ago by WouterDeCoster ♦ 17k
1
vote
0
answers
89
views
0
answers
Tool: BIRCH Bioinformatics System v 3.40
genome sequence tool blast written 5 days ago by brian.fristensky • 20
10
votes
1
answer
290
views
10 follow
1
answer
Tool: Variant annotation and filtration server ALAPY Genome Explorer (AGx)
vcf variant annotation and interpretation tool written 7 days ago by Petr Ponomarenko • 2.3k
125
votes
5
answers
889
views
19 follow
5
answers
Tool: Lossless ALAPY Fastq Compressor (now with stdin/stdout support)
fastq compressor lossless fastq compression tool written 8 weeks ago by Petr Ponomarenko • 2.3k
1
vote
0
answers
568
views
0
answers
Tool: Tools and databases for gene co-linearity and conserved pairs and clusters in a large scale of genomes
tool gene order gene synteny genome gene pair alignment written 15 months ago by wangdp123 • 50
5
votes
2
answers
793
views
2
answers
Tool: ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
tool pathway R bioconductor reactomepa visualization written 10 months ago by Guangchuang Yu • 1.4k • updated 10 days ago by #### • 90
19
votes
1
answer
1.1k
views
11 follow
1
answer
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
clumpify pigz tool compression bbmap storage written 5 months ago by Brian Bushnell ♦ 11k • updated 11 days ago by chen • 860
15
votes
2
answers
1.1k
views
2
answers
Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
fastq tool afterqc polyg filtering quality control written 12 months ago by chen • 860
2
votes
1
answer
144
views
6 follow
1
answer
Tool: An online cute tool to query tumor-gene data from MSK-IMPACT project
msk tumor msk-impact tool mutation written 17 days ago by chen • 860 • updated 14 days ago by youcai • 10
1
vote
0
answers
134
views
0
answers
Tool: Pathview Web server published in NAR
omics visualization pathway analysis rna-seq tool written 18 days ago by bigmawen • 200
1
vote
0
answers
130
views
0
answers
Tool: Computational Suite For Bioinformaticians and Biologists -- CSBB [Version 2.1]
perl R tool rna-seq downstreamanalysis written 14 days ago by praneet007 • 30
2
votes
1
answer
870
views
1
answer
Tool: gogadget: an R package for go analysis visualization and interpretation
R gogadget goseq rna-seq tool written 9 months ago by b.nota • 3.0k
13
votes
2
answers
194
views
7 follow
2
answers
Tool: Collaboration on an empirical QC tool
qc tool rna-seq sequencing written 15 days ago by Michael Dondrup ♦ 41k
1
vote
0
answers
139
views
0
answers
Tool: shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics
chip-seq tool rna-seq written 15 days ago by Bohdan Khomtchouk • 270
1
vote
0
answers
175
views
0
answers
Tool: MAGERI: a software tool for calling rare variants and detecting circulating tumor DNA from UMI-tagged high-throughput sequencing data
rare variant umi resequencing ctdna tool written 21 days ago by mikhail.shugay ♦ 3.1k
3
votes
3
answers
1.2k
views
3
answers
Tool: rna-pdb-tools - idea of Python library with utils (small linux-cmd-like programs) for RNA structures
tool python rna pdb format pdb parser rnapuzzle written 2.1 years ago by mmagnus • 120
4
votes
0
answers
110
views
5 follow
0
answers
Tool: SV2: Support-Vector Structural Variation Genotyper
sv machine-learning tool cnv structural variation written 26 days ago by chromosomegun • 60
9
votes
1
answer
2.0k
views
1
answer
Tool: RNA Modification Database and The Landscape of RNA Modifications
tool microrna rna modification rbp m6a lncrna written 19 months ago by lsp03yjh • 440
0
votes
0
answers
84
views
0
answers
Tool: (Closed) query or future
gene assembly blast rna-seq tool written 28 days ago by inderbiakl0007 • 0
0
votes
0
answers
147
views
0
answers
Tool: MUTAFRAME - a web app for mutation effect prediction & visualization
tool proteomics snp visualization gene mutation written 4 weeks ago by Ibrahim Tanyalcin • 630
5
votes
0
answers
158
views
0
answers
Tool: Immuno-Navigator, a batch-corrected database for gene coexpression in the immune system
immunology batch effects tool gene co-expression written 5 weeks ago by alexis.vandenbon • 70
4
votes
0
answers
366
views
9 follow
0
answers
Tool: MutScan: detect and visualize target mutations by just scanning FastQ, 50X faster than normal pipelines
mutscan opengene fastq mutation tool written 9 weeks ago by chen • 860
25
votes
4
answers
2.3k
views
4
answers
Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 13 months ago by John ♦ 11k
0
votes
0
answers
151
views
0
answers
Tool: prepare_taxa_charts.py: A program to get publication ready taxonomic pie chart images from QIIME
16s tool pie chart python taxonomy qiime written 6 weeks ago by Vijay Lakhujani • 670
4
votes
1
answer
1.4k
views
1
answer
Tool: Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq datasets
tool transcription factor tcga chip-seq lncrna mirna written 7 months ago by lsp03yjh • 440
6
votes
1
answer
196
views
6 follow
1
answer
Tool: UCSC Custom Track Generator Script
genome browser visualization tool written 7 weeks ago by steve • 730 • updated 7 weeks ago by David Langenberger ♦ 7.8k
1
vote
0
answers
261
views
0
answers
Tool: CSBB-v2.0 [Computational Suite for Bioinformaticians and Biologists version 2]
tool python perl R differentialexpression rna-seq written 7 weeks ago by praneet007 • 30
265
votes
9
answers
83k
views
121 follow
9
answers
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel tools next-gen ngs tool written 4.3 years ago by ole.tange • 2.7k
0
votes
0
answers
129
views
0
answers
Tool: using wigCorrelate to get the correlation of samples
chip-seq tool written 7 weeks ago by 984366176 • 10
0
votes
0
answers
140
views
0
answers
Tool: Sequence Dereplication and Database Curator Program (SDDC)
tool genomics proteomics metagenomics sequence genetics written 9 weeks ago by Eslam Samir • 90
<prev • 417 results • page 1 of 14 • next >
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