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Tool: CHIP-Seq data mapping using Bowtie2
chip-seq mapping tool written 1 day ago by tikshyadav19 • 0 • updated 23 hours ago by Qiongyi • 100
46
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4.8k
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28 follow
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Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 23 months ago by Phil Ewels • 620 • updated 23 hours ago by elenichri • 10
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Tool: chromoMap- R package for Interactive visualization and Annotation of chromosomes or regions of any living organism.
genome R visualization tool annotation written 21 months ago by lakshayanand15 • 50
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16
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1.5k
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Tool: CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
c++ tool written 21 months ago by chernouhov sergey • 50
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3.9k
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5 follow
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Tool: fastp (the ultra-fast all-in-one FASTQ preprocessing tool) v0.18.0 released, 2X faster, with many new features.
qc fastp filtering tool written 2.5 years ago by chen • 2.1k • updated 10 days ago by leonardo.rippel • 20
195
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1
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103k
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128 follow
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Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 7.9 years ago by Malachi Griffith ♦ 18k • updated 24 days ago by zlbio12 • 0
2
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325
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Tool: Extend 3' UTR of a GTF file
gtf annotation tool rna-seq python written 3 months ago by Shred • 230
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125
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Tool: (Closed) Python on Django vs Ruby on Rails, which is a better choice for CMS website?
django python rubyonrail tool written 28 days ago by cudemlomo • 0
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268
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Tool: Alternate the wild type and mutant of SARS-CoV-2 N501Y
tool snp written 4 weeks ago by Jiyao Wang • 70
24
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1.1k
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14 follow
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Tool: ClinCNV: CNV detection from short reads
cna variant calling tool cnv written 15 months ago by German.M.Demidov • 1.9k
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1
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16k
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51 follow
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Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
clumpify pigz tool compression bbmap storage written 4.1 years ago by Brian Bushnell ♦ 17k • updated 5 weeks ago by wangpd35 • 0
32
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1
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351
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11 follow
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Tool: BioFlows - Container-enabled Bioinformatics pipeline engine
workflow next-gen pipeline tool rna-seq bioinformatics written 5 weeks ago by mfawzy.sami • 80 • updated 5 weeks ago by Istvan Albert ♦♦ 86k
340
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9
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121k
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183 follow
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Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel tools next-gen ngs tool written 7.9 years ago by ole.tange • 3.9k
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0
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197
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Tool: Annotation tools (prokaryotes): prokka vs eggnog
assembly tool eggnog prokka annotations hmm written 6 weeks ago by willnotburn • 40
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141
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Tool: Filtering BAM files efficiently
genome alignment sam bam tool written 7 weeks ago by ddeemer • 0
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1.6k
views
14 follow
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Tool: trackplot: Fast and minimal dependency standalone R script to generate IGV style locus tracks from bigWig files
tool chip-seq bigwigs R visualization igv written 7 weeks ago by poisonAlien • 3.0k • updated 7 weeks ago by Sael • 20
9
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3
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869
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5 follow
3
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Tool: SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta bioinformatics java sequences tool written 13 months ago by Hugo • 340
2
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1
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291
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1
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Tool: Alternate wild type and mutant of SNPs in 3D
jupyter notebook 3d viewer icn3d snp tool written 6 months ago by Jiyao Wang • 70
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161
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Tool: ChromSCape - A R/Shiny application to analyze single-cell epigenomics data
scchip-seq tool scatac-seq chip-seq R single-cell written 8 weeks ago by pacome.pr • 100
2
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160
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Tool: driveR - Prioritizing Cancer Driver Genes Using Genomics Data
driver R driver gene tool cancer written 8 weeks ago by egeulgen • 1.1k
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129
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Tool: VTAM: Validation and Taxonomic Assignation of Metabarcoding Data
metabarcoding python amplicon tool vsearch written 9 weeks ago by aitor.gonzalez • 20
13
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2
answers
4.2k
views
7 follow
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Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
variant calling tool cancer fusion rna-seq gene written 2.9 years ago by uhrigs • 130
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11
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3.1k
views
11
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Tool: New Mac program for molecular biologists
software tool written 18 months ago by vytarasov • 110
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324
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Tool: DiffBind 3.0: Extensive updates in Bioconductor 3.12
chipseq diffbind chip-seq atac-seq tool written 11 weeks ago by Rory Stark • 900
1
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260
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Tool: Graphia: A platform for the graph-based visualisation and analysis of complex data
high dimensional data transcriptomics networks tool written 11 weeks ago by Tom Freeman • 10
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237
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Tool: Trimviz, a lightweight QC tool to assess impact of read-trimming and aligner soft-clipping
trimming tool fastq clipping alignment qc written 12 weeks ago by stuart archer • 70
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244
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Tool: Introducing WARP: A collection of cloud-optimized workflows for biological data processing and analysis
epigenomics tool genomics single-cell workflows wdl written 12 weeks ago by vdauwera • 990
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5.7k
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2
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Tool: SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
fasta fastq seqkit tool written 4.3 years ago by shenwei356 ♦ 5.7k • updated 3 months ago by adriana.gallego.02 • 10
2
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0
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267
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0
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Tool: Machine learning Python API for ligand-protein binding-affinity prediction
tool python machine learning R binding-affinity api written 3 months ago by casey • 20
1
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1
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271
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1
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Tool: PathogenAR - Structural Biology in Augmented Reality
influenza augmented reality pathogen tool written 7 months ago by karlynn.noble • 40
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