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31
votes
1
answer
759
views
22 follow
1
answer
Tool: karyoploteR: uncircle your genomes
dataviz R next-gen tool karyoploter written 5 weeks ago by bernatgel • 710
16
votes
3
answers
1.3k
views
3
answers
Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
fastq tool afterqc polyg filtering quality control written 14 months ago by chen • 910
9
votes
2
answers
2.1k
views
2
answers
Tool: RNA Modification Database and The Landscape of RNA Modifications
tool microrna rna modification rbp m6a lncrna written 21 months ago by lsp03yjh • 450
11
votes
0
answers
851
views
0
answers
Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash sketch bbmap tool blast written 5 months ago by Brian Bushnell ♦ 12k
270
votes
9
answers
86k
views
129 follow
9
answers
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel tools next-gen ngs tool written 4.4 years ago by ole.tange • 2.8k • updated 21 days ago by johnsenkyle13 • 0
4
votes
0
answers
866
views
0
answers
Tool: BPGA - Bacterial Pan Genome Analysis pipeline
genome comparative-genomics sequence tool bacteria written 14 months ago by bpgatool • 50
3
votes
0
answers
126
views
0
answers
Tool: CutePeaks : A Sanger Trace file viewer
trace tool sanger scf ab1 viewer written 24 days ago by sacha • 770
1
vote
0
answers
180
views
0
answers
Tool: TCGA & METABRIC Breast Cancer Subtype Survival Curve
gene tool rna-seq written 4 weeks ago by xushutan • 20
1
vote
0
answers
165
views
0
answers
Tool: DASC, a bioinformatics tool for detecting hidden batch effects in gene expression datasets
R batcheffects tool rna-seq written 4 weeks ago by Ar • 690
1
vote
0
answers
424
views
0
answers
Tool: oncoNcRNA: Exploring the lncRNAs and miRNAs with Oncogenic Potentials from TCGA and CCLE cancer samples
tool cancer tcga ccle mirna lncrna written 5 months ago by lsp03yjh • 450
1
vote
0
answers
270
views
0
answers
Tool: prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME
python 16s taxonomy tool qiime written 3 months ago by Vijay Lakhujani • 1.1k
4
votes
0
answers
135
views
0
answers
Tool: labnote: A light-weight HTML lab notebook generator
notebook jupyter tool labnote rmarkdown reproducible written 5 weeks ago by keith.hughitt • 180
0
votes
0
answers
143
views
0
answers
Tool: AIR: New SaaS tool for RNASeq data analysis
tool rna-seq written 5 weeks ago by hmurray • 0
5
votes
1
answer
1.5k
views
1
answer
Tool: Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq and TCGA datasets
transcription factor lncrna chip-seq tool mirna written 9 months ago by lsp03yjh • 450
1
vote
0
answers
91
views
0
answers
Tool: DataMed / Biomedical data search engine
gene tool rna-seq written 5 weeks ago by mandana.salimi • 10
9
votes
0
answers
543
views
5 follow
0
answers
Tool: Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias
quality filtering filterbytile bbmap tool illumina written 6 months ago by Brian Bushnell ♦ 12k
10
votes
1
answer
1.1k
views
1
answer
Tool: I-PV: a CIRCOS module for interactive protein sequence visualization
interactive sequence circos javascript tool written 21 months ago by Ibrahim Tanyalcin • 750
11
votes
0
answers
216
views
7 follow
0
answers
Tool: Open Targets batch search, your list of human genes matched to our disease associations
bioinformatics disease drug tool open targets written 6 weeks ago by Denise - Open Targets • 3.9k • updated 6 weeks ago by WouterDeCoster ♦ 20k
126
votes
5
answers
1.2k
views
20 follow
5
answers
Tool: Lossless ALAPY Fastq Compressor (now with stdin/stdout support)
fastq compressor lossless fastq compression tool written 3 months ago by Petr Ponomarenko • 2.4k
22
votes
2
answers
1.2k
views
2
answers
Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 11 months ago by WouterDeCoster ♦ 20k
2
votes
0
answers
181
views
0
answers
Tool: BIRCH Bioinformatics System v 3.40
genome sequence tool blast written 8 weeks ago by brian.fristensky • 30
11
votes
1
answer
616
views
10 follow
1
answer
Tool: Variant annotation and filtration server ALAPY Genome Explorer (AGx)
vcf variant annotation and interpretation tool written 8 weeks ago by Petr Ponomarenko • 2.4k
2
votes
0
answers
660
views
0
answers
Tool: Tools and databases for gene co-linearity and conserved pairs and clusters in a large scale of genomes
tool gene order gene synteny genome gene pair alignment written 16 months ago by wangdp123 • 60
12
votes
2
answers
990
views
2
answers
Tool: ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
tool pathway R bioconductor reactomepa visualization written 12 months ago by Guangchuang Yu • 1.6k • updated 8 weeks ago by #### • 130
27
votes
1
answer
1.6k
views
16 follow
1
answer
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
clumpify pigz tool compression bbmap storage written 7 months ago by Brian Bushnell ♦ 12k • updated 9 weeks ago by chen • 910
2
votes
1
answer
256
views
6 follow
1
answer
Tool: An online cute tool to query tumor-gene data from MSK-IMPACT project
msk tumor msk-impact tool mutation written 9 weeks ago by chen • 910 • updated 9 weeks ago by youcai • 20
1
vote
0
answers
206
views
0
answers
Tool: Pathview Web server published in NAR
omics visualization pathway analysis rna-seq tool written 10 weeks ago by bigmawen • 230
1
vote
0
answers
244
views
0
answers
Tool: Computational Suite For Bioinformaticians and Biologists -- CSBB [Version 2.1]
perl R tool rna-seq downstreamanalysis written 9 weeks ago by praneet007 • 30
4
votes
1
answer
1.0k
views
1
answer
Tool: gogadget: an R package for go analysis visualization and interpretation
R gogadget goseq rna-seq tool written 11 months ago by b.nota • 3.5k
13
votes
2
answers
269
views
7 follow
2
answers
Tool: Collaboration on an empirical QC tool
qc tool rna-seq sequencing written 9 weeks ago by Michael Dondrup ♦ 42k
<prev • 424 results • page 1 of 15 • next >
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