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5
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596
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Tool: RNA Motifs and CLIP-seq database from PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP and uvCLIP
clip tool eclip hits-clip par-clip iclip written 12 weeks ago by lsp03yjh • 710
3
votes
0
answers
124
views
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Tool: Deciphering LncRNA-Target, NcRNA-Target, Pseudogene-Target and mRNA-Target Interactions from RNA Interactome Sequencing Data
lncrna interactions rna interactome starbase tool written 17 days ago by lsp03yjh • 710
12
votes
0
answers
176
views
12 follow
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Tool: iStack: an R solution for plotting stacked bars using custom icons
R tool written 4 days ago by brettgao2018 • 150
0
votes
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answers
51
views
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Tool: cnv_facets: somatic Copy Number Variant calling using the facets package
tool cancer somatic command line facets cnv written 3 days ago by dariober ♦ 9.7k
19
votes
1
answer
669
views
1
answer
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
bam sam sort markduplicates bqsr tool written 7 weeks ago by Charlotte.Herzeel • 130
6
votes
0
answers
2.7k
views
0
answers
Tool: Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
tool cancer rna-seq clip-seq rbp lncrna written 3.9 years ago by lsp03yjh • 710
11
votes
2
answers
3.6k
views
2
answers
Tool: RNA Modification Database and Epitranscriptome Sequencing Data
tool epitranscriptome rna modification rbp m6a lncrna written 3.2 years ago by lsp03yjh • 710 • updated 8 days ago by africainterpol101 • 0
22
votes
0
answers
793
views
25 follow
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Tool: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling
bioconductor ggplot2 ggrepel tool volcano plot written 3 months ago by Kevin Blighe ♦ 33k
5
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answers
98
views
0
answers
Tool: New ultraperformant version of SICER/epic: epic2
chip-seq tool written 14 days ago by endrebak852 • 90
0
votes
0
answers
109
views
0
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Tool: Open Targets Genetics: variant-centric resource for drug target identification and prioritisation
gwas tool snp phenotype gene drug written 22 days ago by Denise - Open Targets • 4.7k
29
votes
3
answers
2.0k
views
15 follow
3
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Tool: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene venn diagram pca tool rna-seq written 6 months ago by Jennifer Pham • 260 • updated 17 days ago by nathanlee • 10
22
votes
2
answers
899
views
21 follow
2
answers
Tool: BioTuring Browser: Making single-cell sequencing data in published studies really accessible!
sc-rna rna single cell rna-seq tool written 11 weeks ago by sonpham • 550
0
votes
0
answers
151
views
0
answers
Tool: DASHR 2.0: integrated database of human small non-coding RNA genes and mature products
noncoding rna small rna tool rna-seq ncrna written 5 weeks ago by pkouxa • 0 • updated 5 weeks ago by WouterDeCoster ♦ 35k
3
votes
0
answers
153
views
0
answers
Tool: Analysis of codon usage in R/Bioconductor using coRdon
R tool codon usage written 5 weeks ago by anamaria • 30
0
votes
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answers
115
views
0
answers
Tool: CAGm: a repository of germline microsatellite variations in the 1000 genomes project
microsatellites tool 1000 genomes project written 5 weeks ago by nkinney06 • 30
7
votes
0
answers
1.4k
views
0
answers
Tool: Digital Expression Explorer
geo tool rna-seq written 3.2 years ago by mark.ziemann • 1.1k
0
votes
0
answers
94
views
0
answers
Tool: VisualMSI: detect and visualize microsatellite instability(MSI) from NGS data
opengene visualization detection msi tool written 5 weeks ago by chen • 1.7k
2
votes
0
answers
148
views
0
answers
Tool: Web-based Interactive Omics VisualizatioN (WIlsON), a nice tool for individual scientists as well as bioinfo core units
next-gen tool chip-seq R rna-seq gene written 6 weeks ago by mario.looso • 30
28
votes
0
answers
6.8k
views
16 follow
0
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Tool: Snakemake--Python-Based Workflow Management
python workflow tool written 5.0 years ago by Sean Davis ♦ 25k • updated 6 weeks ago by carlopecoraro2 • 780
2
votes
0
answers
140
views
0
answers
Tool: DocMind Analyst - A New NGS Data Analysis Software Suite With A Graphical User Interface Specifically Designed For Researchers Without Bioinformatics Background
phylogeny assembly 16s rrna analysis gui tool written 6 weeks ago by DMA • 20
7
votes
1
answer
3.1k
views
1
answer
Tool: Transcription Factor Binding Sites, Motifs and Expression Profiles from ~10200 ChIP-seq and ~20000 RNA-seq samples
transcription factor lncrna chip-seq tool mirna written 2.2 years ago by lsp03yjh • 710
12
votes
0
answers
272
views
7 follow
0
answers
Tool: Book: GNU Parallel 2018 - for beginners and advanced users
ngs parallel tool written 6 weeks ago by ole.tange • 3.3k
55
votes
7
answers
1.9k
views
9 follow
7
answers
Tool: ASCIIGenome: Text Only Genome Viewer!
genome browser java asciigenome tool terminal written 2.4 years ago by dariober ♦ 9.7k • updated 7 weeks ago by quokka • 10
17
votes
0
answers
3.9k
views
0
answers
Tool: ggrepel: repel overlapping text labels in ggplot2
R tools visualization written 2.9 years ago by Kamil • 1.9k • updated 7 weeks ago by RamRS ♦ 19k
6
votes
0
answers
155
views
0
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Tool: pinfish: tools to annotate genomes using long read transcriptomics data
nanopore tool annotation isofrom rna-seq cdna written 7 weeks ago by Botond Sipos • 1.7k
11
votes
0
answers
778
views
9 follow
0
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Tool: [Crushing the bureaucracy in bioinformatics] Introducing Skymap-JupyterHub: accessing and utilizing reprocessed expression/ allelic read count profiles from >400,000 sequencing runs made simple
chip-seq snp rna-seq tool written 4 months ago by btsui • 280
5
votes
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200
views
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Tool: Workflow for structural variants from long read sequencing data
nanopore structural variation snakemake pacbio tool written 9 weeks ago by WouterDeCoster ♦ 35k
1
vote
0
answers
2.1k
views
0
answers
Tool: TCGA & METABRIC Breast Cancer Subtype Survival Curve
gene tool rna-seq written 18 months ago by xushutan • 40
17
votes
1
answer
2.8k
views
1
answer
Tool: SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
fasta fastq seqkit tool written 2.2 years ago by shenwei356 ♦ 4.3k • updated 9 weeks ago by bio_d • 0
18
votes
16
answers
12k
views
14 follow
16
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Tool: Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, circRNAs, CeRNAs And RNA-Binding Proteins From TCGA 32 Cancer Types and CLIP-seq data
tool cancer tcga rna-binding proteins mirna lncrna written 4.8 years ago by lsp03yjh • 710
<prev • 521 results • page 1 of 18 • next >
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