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1,000 results • Page
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News:
For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
GenBank
16 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
478
views
News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
445
views
News:
Metagenomics tools recommeder system
NGS
Metagenomics
Recommender-system
updated 16 months ago by
Ram
43k • written 16 months ago by
KATA
• 0
0
votes
0
replies
750
views
News:
Hands-On NGS Data Analysis Workshops 2023
NGS
Workshop
RNA-Seq
DNA-Seq
16 months ago by
David Langenberger
11k
1
vote
5
replies
1.2k
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
456
views
News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
16 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
670
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.8k
views
News:
New chat server (Discord) for bioinformatics
community
16 months ago by
Samuel Lampa
★ 1.3k
0
votes
0
replies
659
views
News:
Online course - Genome Assembly and Annotation
Long-reads
Genome-Annotation
Biodiversity
Genome-Assembly
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
vote
3
replies
939
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
16 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
602
views
News:
Winter School in Bioinformatics - last seats available
Genomics
Unix
RNA-seq
docker
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
519
views
News:
Virtual RNA-seq Analysis (Model Organism) Workshop
virtual
expression
rna-seq
analysis
workshop
16 months ago by
mia.nahom
▴ 10
0
votes
0
replies
532
views
News:
Introduction to R Shiny course
WebApplications
R
RShiny
17 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
580
views
News:
New version of ElasticBLAST (1.0.0) available.
NCBI
ElasticBLAST
BLAST
17 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
560
views
News:
Courses in January - still a few seats available
R-Shiny
Genomics
Unix
R
updated 15 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
378
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
507
views
News:
Cellosaurus release 44 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
424
views
News:
Introductory video to the Cellosaurus
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
votes
3
replies
1.1k
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 17 months ago by
4galaxy77
2.8k • written 17 months ago by
Pierre Lindenbaum
161k
2
votes
3
replies
725
views
News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
17 months ago by
PeterC_NCBI
▴ 410
1
vote
6
replies
1.2k
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 16 months ago by
synat.keam
▴ 100 • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
343
views
News:
INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography
Paleobiology
R
17 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
375
views
News:
Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics
Cancer-Genomics
R
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
578
views
News:
course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads
Assembly
Nanopore
Genome
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
372
views
News:
Online training - VERSION CONTROL FOR RESEARCHERS
Version
Control
Git
Github
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
476
views
News:
Research Training In NGS Data Analysis
analysis
data-analysis
updated 17 months ago by
Ram
43k • written 17 months ago by
RASALSI
• 0
0
votes
0
replies
470
views
News:
Bayesian regression modeling in R course
RegressionModeling
Bayesian
R
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
514
views
News:
Genome Assembly and Annotation course
Annotation
Nanopore
GenomeAssembly
Pacbio
18 months ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
1.2k
views
News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
18 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
424
views
News:
Nextflow online training
Nextflow
Workflow
Reproducibility
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
1.3k
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
18 months ago by
David Langenberger
11k
0
votes
0
replies
535
views
News:
The Association for Single Cell Analysis (ASCA)
genomics
singlecell
metabolomics
sequencing
proteomics
18 months ago by
dnsv.ev
• 0
0
votes
0
replies
470
views
News:
Deep Learning in Population Genomics and Phylogeography
DeepLearning
Phylogeography
PopulationGenomics
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
445
views
News:
Metabarcoding in Microbial Ecology Workshop
Qiime2
R
Metabarcoding
Microbial-Ecology
18 months ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
669
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
400
views
News:
Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor
RNAseq
R
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
610
views
News:
Winter School in Bioinformatics
course
workshop
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
480
views
News:
Introduction to Nextflow
Nextflow
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
728
views
News:
Seascape Genomics in R
Genomics
Seascape
R
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
381
views
News:
Bioinformatics courses in November
Bioconductor
Genomics
R
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
895
views
News:
Flow cytometry analysis with R/Bioconductor course
Bioconductor
R
Cytometry
Flow
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
416
views
News:
course: RNA-seq analyses in non-model organisms
differential
Bioconductor
RNAseq
expression
non-model
organisms
analysis
R
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
419
views
News:
course - Developing R/Bioconductor packages for genomics
developing
package
Bioconductor
Genomics
R
19 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
483
views
News:
Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics
MagicBLAST
BLAST
NCBI
Primer-BLAST
19 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
651
views
News:
course - Unix and shell scripting for bioinformatics
bash
Shell-scripting
Unix
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
442
views
News:
course: Data Visualization in Python
Visualisation
Python
Data
updated 19 months ago by
GenoMax
142k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
436
views
News:
Seascape Genomics in R course
Genomics
R
Seascape
Population
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
561
views
News:
Cellosaurus API
line
cell
API
20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
445
views
News:
Cellosaurus release 43 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
390
views
News:
Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation
genomics
database
webinar
updated 17 months ago by
Ram
43k • written 20 months ago by
Kate
• 0
1,000 results • Page
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Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
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Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
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by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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