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723 results • Page
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News:
Bioinformatics internships with Google Summer of Code 2019
intern
Ensembl
GSOC
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Emily
23k
0
votes
0
replies
733
views
News:
BioC2020: mark your calendars!
conference
Bioc2020
updated 11 months ago by
Ram
43k • written 4.5 years ago by
venu
7.1k
0
votes
0
replies
129
views
News:
Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore
RNAseq
6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Introduction to Machine Learning Workshop
Machine-Learning
Big-Data
Python
updated 11 months ago by
Ram
43k • written 5.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
864
views
News:
Training in Bioinformatics for Beginners @NIH
omics
biomedical
updated 11 months ago by
Ram
43k • written 4.8 years ago by
AABI
▴ 140
0
votes
0
replies
842
views
News:
Course. Squeezing biology out of statistics: Gene set and pathway analysis in HT data
R
RNA-Seq
next-gen
ChIP-Seq
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
6
votes
0
replies
978
views
News:
CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl
thanks
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Michael R. Crusoe
★ 1.9k
0
votes
0
replies
699
views
News:
EMBO | EMBL Symposium: Biological Oscillators: Design, Mechanism, Function
Oscillation
Modelling
Imaging
updated 11 months ago by
Ram
43k • written 4.6 years ago by
EMBL Events
▴ 10
0
votes
0
replies
147
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 18 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
789
views
News:
Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
training
RNA-seq
updated 11 months ago by
Ram
43k • written 5.5 years ago by
AABI
▴ 140
0
votes
0
replies
906
views
News:
dbVar Structural Variation Non-redundant Reference Sets (Alpha) Release
next-gen-sequencing
assembly
gene
genome
updated 12 months ago by
Ram
43k • written 5.9 years ago by
theffero
• 0
2
votes
0
replies
662
views
News:
Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning
R
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
461
views
News:
Cellosaurus release 45 is available
knowledgebase
cell-line
updated 11 months ago by
Ram
43k • written 13 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
764
views
News:
UniProtKB: Standardization of 'Catalytic activity' annotations
uniprot
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Elisabeth Gasteiger
★ 2.4k
8
votes
0
replies
1.3k
views
News:
Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 4.9 years ago by
David Langenberger
11k
0
votes
0
replies
869
views
News:
Nextflow training course in Berlin
Pipeline
Nextflow
updated 11 months ago by
Ram
43k • written 4.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.1k
views
News:
4th International Conference on Advances in Biotechnology and Bioscience (Adv.Biotech 2018)
Adv.Biotech-2018
Biotechnology
Bioscience
updated 12 months ago by
Ram
43k • written 5.9 years ago by
bioscienceconferences
• 0
0
votes
0
replies
845
views
News:
Training in Statistical Analysis using R @NIH,September 4-6,2019
Analysis
Statistical
r-platform
updated 11 months ago by
Ram
43k • written 4.9 years ago by
AABI
▴ 140
0
votes
0
replies
267
views
News:
BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI
BLAST
3 months ago by
PeterC_NCBI
▴ 410
2
votes
0
replies
551
views
News:
Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
10 months ago by
Marcel Ribeiro-Dantas
▴ 470
1
vote
0
replies
120
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 1 day ago by
Ram
43k • written 2 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
799
views
News:
Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
R
Biomedical
next-gen
Statistical-analysis
updated 11 months ago by
Ram
43k • written 4.0 years ago by
AABI
▴ 140
1
vote
0
replies
1.1k
views
News:
Crowdsourcing the Advancement of Microbiome Research: precisionFDA & Mosaic Challenges Launched!
next-gen
challenge
metagenomics
updated 12 months ago by
Ram
43k • written 6.3 years ago by
sprezek
▴ 40
0
votes
0
replies
1.2k
views
News:
5-day Epigenomics Workshop in Berlin. Deadline
RNA-Seq
sequencing
ChIP-Seq
updated 12 months ago by
Ram
43k • written 6.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
872
views
News:
Course: Metagenomics and Barcoding in Greece, April 1-5, Transmitting Science
R
next-gen
updated 11 months ago by
Ram
43k • written 5.3 years ago by
soledad.esteban
• 0
0
votes
0
replies
357
views
News:
Course - RNAseq in non-model organisms
R
Differential-Expression-Analysis
RNA-seq
Bioconductor
updated 7 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
712
views
News:
Course - Longitudinal data analysis in R
Longitudinal-Data
R
Genomics
updated 12 months ago by
Ram
43k • written 12 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.1k
views
News:
Training in Cloud Computing For Biomedical Researchers@NIH
cloud
researchers
updated 11 months ago by
Ram
43k • written 5.4 years ago by
AABI
▴ 140
0
votes
0
replies
703
views
News:
One Week Reminder for the precisionFDA Gaining New Insights by Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 11 months ago by
Ram
43k • written 4.0 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
427
views
News:
Spatial Omics and Multiplexed Image Analysis course
Spatial-Omics
Multiplexed-Image-Analysis
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.0k
views
News:
Data manipulation and visualization with Python
python
Big-Data
genomics
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
820
views
News:
EMBL Conference: In situ Structural Biology - From Cryo-EM to Integrative Modelling
Biophysical-analysis
Modelling
Structural-Biology
updated 11 months ago by
Ram
43k • written 4.6 years ago by
EMBL Events
▴ 10
1
vote
0
replies
181
views
News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
10 weeks ago by
David Langenberger
11k
1
vote
0
replies
700
views
News:
SNAKEMAKE course in Berlin. Last places available
Python
updated 11 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.1k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
omics
metagenomics
updated 12 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
637
views
News:
Call for hacking proposals: NBDC/DBCLS BioHackathon 2019
BioHackathon
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Pierre Lindenbaum
161k
0
votes
0
replies
722
views
News:
Training in Advanced Transcriptomics (RNA-Seq) Analysis@NIH, June 9-12,2020
RNA-Seq
Biomedical
next-gen
updated 11 months ago by
Ram
43k • written 4.0 years ago by
AABI
▴ 140
3
votes
0
replies
798
views
News:
::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS
Workshop
updated 11 months ago by
Ram
43k • written 4.5 years ago by
David Langenberger
11k
0
votes
0
replies
298
views
News:
New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST
NCBI
BLAST
5 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
1.4k
views
News:
Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar
RNA-Seq
next-gen
single-cell
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Jennifer Pham
▴ 450
0
votes
0
replies
123
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 16 days ago by
Ram
43k • written 16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
772
views
News:
EMBO | EMBL Symposium: The Four-Dimensional Genome
microscopy
genome
DNA
genomics
updated 11 months ago by
Ram
43k • written 4.8 years ago by
EMBL Events
▴ 10
5
votes
0
replies
1000
views
News:
Free online Ensembl REST API training
perl
rest-api
jupyter
python
ensembl
updated 11 months ago by
Ram
43k • written 5.4 years ago by
Emily
23k
0
votes
0
replies
730
views
News:
Training in Rosetta for Molecular Modeling and Design @NIH,June 22-25,2020
Data-analysis
Modeling
RNA-Seq
Molecular-design
updated 11 months ago by
Ram
43k • written 4.0 years ago by
AABI
▴ 140
0
votes
0
replies
1.2k
views
News:
Training in Molecular Modeling and Molecular Dynamics @NIH,May 21-24,2019
dynamics
training
biology
RNA-Seq
modeling
updated 11 months ago by
Ram
43k • written 5.2 years ago by
AABI
▴ 140
0
votes
0
replies
804
views
News:
UniProt: Change of annotation topic 'Interaction'
uniprot
xml
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Elisabeth Gasteiger
★ 2.4k
0
votes
0
replies
1.1k
views
News:
Spring bioinformatics courses at Edinburgh Genomics: Snakemake, Jalview, and Graphia
training
workshop
updated 11 months ago by
Ram
43k • written 5.1 years ago by
Edinburgh Genomics Training
▴ 40
1
vote
0
replies
1.3k
views
News:
Population Genomics course online
R
SNP
next-gen
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
819
views
News:
Workshop: Phylogenomics. June (4-8) in Berlin
next-gen
SNP
updated 12 months ago by
Ram
43k • written 6.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
805
views
News:
Cellosaurus release 35 is available
knowledgebase
cell-line
updated 11 months ago by
Ram
43k • written 3.9 years ago by
Amos Bairoch
▴ 120
723 results • Page
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Recent Votes
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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