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1,000 results • Page 5 of 20
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News: Kover will provide support via Biostars
kmer kover machine-learning
updated 7 months ago by 41k • written 7.5 years ago by ▴ 90
4
votes
0
replies
464
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
5 months ago by David Langenberger 10k
4
votes
0
replies
2.8k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 9 months ago by 41k • written 10.2 years ago by ★ 2.4k
4
votes
0
replies
658
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 5 months ago by 41k • written 3.9 years ago by ▴ 730
3
votes
3
replies
964
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
6 months ago by PeterC_NCBI ▴ 370
3
votes
3
replies
2.0k
views
News: Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
next-gen RNA-Seq genome SNP
updated 7 months ago by 41k • written 6.8 years ago by ★ 2.4k
3
votes
0
replies
981
views
News: Online training - Unix and shell scripting for bioinformatics
Linux scripting Unix
updated 9 months ago by 41k • written 2.8 years ago by ★ 2.4k
3
votes
0
replies
687
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 9 months ago by 41k • written 2.8 years ago by ▴ 270
3
votes
0
replies
725
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 5 months ago by 41k • written 4.1 years ago by 10k
3
votes
0
replies
1.2k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 5 months ago by 41k • written 4.1 years ago by ★ 2.4k
3
votes
3
replies
2.2k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 9 months ago by 41k • written 10.6 years ago by ▴ 830
3
votes
0
replies
2.4k
views
News: Samtools/htslib/bcftools 1.1 released
htslib samtools
updated 8 months ago by 41k • written 9.2 years ago by 104k
3
votes
1
reply
642
views
News: Ensembl Pre! site retirement - 31st January 2021
Ensembl
updated 9 months ago by 41k • written 3.2 years ago by ★ 2.3k
3
votes
0
replies
1.9k
views
News: Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq biotech next-gen-sequencing
updated 6 months ago by 41k • written 6.4 years ago by ▴ 70
3
votes
0
replies
966
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 6 months ago by 41k • written 5.3 years ago by 23k
3
votes
0
replies
1.3k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 6 months ago by 41k • written 4.4 years ago by ★ 2.4k
3
votes
0
replies
901
views
News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 6 months ago by 41k • written 5.7 years ago by 26k
3
votes
4
replies
2.2k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 7 months ago by 41k • written 7.1 years ago by ▴ 130
3
votes
0
replies
1.8k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 6 months ago by 41k • written 5.9 years ago by ★ 1.2k
3
votes
1
reply
6.6k
views
News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 6 months ago by 41k • written 6.0 years ago by 136k
3
votes
0
replies
1.0k
views
News: New command line tool for annotating variants, vai.pl
UCSC SNP VAI
updated 6 months ago by 41k • written 6.5 years ago by ▴ 580
3
votes
0
replies
1.6k
views
News: Ensembl in the Google Summer of Code 2016
ensembl GSOC Google
updated 8 months ago by 41k • written 7.8 years ago by 23k
3
votes
0
replies
660
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 6 months ago by 41k • written 4.2 years ago by 6.3k
3
votes
1
reply
532
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 11 months ago by 41k • written 19 months ago by ▴ 60
3
votes
1
reply
2.4k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 9 months ago by 41k • written 10.8 years ago by 158k
3
votes
0
replies
141
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
10 days ago by PeterC_NCBI ▴ 370
3
votes
1
reply
1.3k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 6 months ago by 41k • written 6.7 years ago by 23k
3
votes
0
replies
1.2k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 6 months ago by 41k • written 5.0 years ago by ★ 2.2k
3
votes
1
reply
870
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 6 months ago by 41k • written 4.4 years ago by ★ 2.4k
3
votes
2
replies
573
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
6 months ago by PeterC_NCBI ▴ 370
3
votes
2
replies
1.1k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 6 months ago by 41k • written 5.5 years ago by ★ 3.0k
3
votes
1
reply
768
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 6 months ago by 41k • written 4.5 years ago by ▴ 150
3
votes
2
replies
2.1k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
10 days ago by Ming Tommy Tang ★ 3.6k
3
votes
1
reply
2.6k
views
News: Ngs Session At Biocomp Bg 2012 Conference!
next-gen-sequencing
updated 9 months ago by 41k • written 11.5 years ago by ▴ 50
3
votes
2
replies
3.7k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 9 months ago by 41k • written 10.9 years ago by 20k
3
votes
1
reply
1.4k
views
News: Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 9 months ago by 41k • written 10.0 years ago by 158k
3
votes
0
replies
746
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 5 months ago by 41k • written 4.0 years ago by ★ 2.4k
3
votes
0
replies
250
views
News: gnomAD v4 released
gnomad
4 weeks ago by Pierre Lindenbaum 158k
3
votes
1
reply
882
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 6 months ago by 41k • written 4.8 years ago by ▴ 60
3
votes
0
replies
1.8k
views
News: Dnanexus Is Giving Away 1 Free Agbt 4-Day Badge
next-gen conference
updated 9 months ago by 41k • written 10.9 years ago by ▴ 30
3
votes
0
replies
1.3k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 6 months ago by 41k • written 5.7 years ago by 136k
3
votes
2
replies
940
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 6 months ago by 41k • written 4.9 years ago by • 0
3
votes
0
replies
3.2k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 9 months ago by 41k • written 9.8 years ago by 19k
3
votes
2
replies
486
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
3
votes
1
reply
1.3k
views
News: GATK returns to a fully open-source license
gatk
updated 6 months ago by 41k • written 6.5 years ago by 99k
3
votes
0
replies
1.6k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 5 months ago by 41k • written 3.5 years ago by 136k
3
votes
0
replies
1.5k
views
News: Bioconductor Conference, July 31 - Aug 1, 2014, Boston
bioconductor
updated 9 months ago by 41k • written 9.5 years ago by 26k
3
votes
2
replies
2.5k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 8 months ago by 41k • written 8.8 years ago by 104k
3
votes
0
replies
2.6k
views
News: SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq workshop lncRNA microRNA
updated 9 months ago by 41k • written 9.5 years ago by ★ 1.3k
3
votes
3
replies
3.8k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 9 months ago by 41k • written 11.3 years ago by 99k
1,000 results • Page 5 of 20
Recent Votes
Answer: GO categorization
Comment: Using metagenome assembly and binning to identify and mitigate contamination in
Answer: GO categorization
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
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Popular Question to beausoleilmo ▴ 560
Commentator to Brian Bushnell 19k
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Recent Replies
Comment: Should I scale all genes in single cell Seurat? by synat.keam ▴ 80
Thanks, António for your kind and detailed responses. You helped clear my doubt about scaling! Kind Regards, Synat
Comment: Using metagenome assembly and binning to identify and mitigate contamination in by Brian Bushnell 19k
It's not a silly question! And yes, it can be done. JGI is currently testing various binning tools to try to find the best protocol for t…
Answer: GO categorization by geneontologyhelp ▴ 270
[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
Comment: Problematic fastq files...How can we trust them? by blackadder ▴ 30
Thanks for the feedback fellas! I agree with the aforementioned!
Comment: Which program, tool, or strategy do you use to visualize genomic rearrangements? by cmdcolin ★ 3.4k
i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
Answer: The number of variations in the pan-genome is reduced compared to the variations by Jordan M Eizenga ▴ 410
If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
Answer: How to find node Postion and source(sample) ? by Jordan M Eizenga ▴ 410
You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
Comment: How Can I move the scattered dots more closer into the center of box ? by Brian Bushnell 19k
I would just draw them in by hand where you want them.
Comment: How to identify CG, CHG, or CHH from MeDIP data by Tm ★ 1.1k
I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too? We tried using Q…
Comment: Problematic fastq files...How can we trust them? by Brian Bushnell 19k
I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
Answer: Finding human .vcf files online to download by cmdcolin ★ 3.4k
---------- some common ones include 1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ …
Comment: GO categorization by m.habib • 0
Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp by jv ★ 1.2k
I wonder if using cell hashing, which would allow pooling of cells from multiple samples before droplet formation, could improve things her…
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands? by Malachi Griffith 19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
Answer: How Can I move the scattered dots more closer into the center of box ? by Trivas ★ 1.5k
You added a position dodge on your boxplot but not on your points.
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