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News: Training in Molecular Modeling and Molecular Dynamics @NIH,February 18-21,2020
Structural-biology Modeling next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
2
votes
0
replies
621
views
News: 2-day Nextflow training course in Berlin
workflow nextflow
updated 11 months ago by 43k • written 4.3 years ago by ★ 2.5k
1
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0
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862
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News: Training in Metagenomics Data Analysis @ NIH,February 10-13,2020
Metagenomics Biomedical next-gen Data-analysis
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
0
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0
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829
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News: Training in Statistical Analysis using R @NIH, February 5-7,2020
statistical-analysis R training
updated 11 months ago by 43k • written 4.4 years ago by ▴ 140
1
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0
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1.4k
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News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 11 months ago by 43k • written 4.4 years ago by 20k
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0
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1.0k
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News: Course - Proteomics Using R/Bioconductor in Berlin
R Proteomics Bioconductor
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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951
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News: NGS Data Analysis Training for Researchers - March 25-27 in Munich
NGS data-analysis training workshop
updated 11 months ago by 43k • written 4.4 years ago by 11k
4
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0
replies
726
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 11 months ago by 43k • written 4.4 years ago by ▴ 740
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0
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869
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News: Nextflow training course in Berlin
Pipeline Nextflow
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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592
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News: Speciation Genomics course
R SNP next-gen
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
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0
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761
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News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
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0
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983
views
News: Long-read nanopore Sequencing course
software-error Long-reads assembly nanopore Pacbio
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
1
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0
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710
views
News: Cellosaurus release 33 is available
knowledgebase cell-line
updated 11 months ago by 43k • written 4.4 years ago by ▴ 120
0
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0
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709
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
Genomics rna-seq next-gen
updated 11 months ago by 43k • written 4.4 years ago by ▴ 140
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0
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1.0k
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News: Physalia courses in February 2020 (Berlin)
assembly R SNP sequencing
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
1
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0
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865
views
News: UniProt: Changes to Proteomes
uniprot proteome
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
0
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0
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893
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News: UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
uniprot protein xml
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
0
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0
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803
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News: UniProt: Change of annotation topic 'Interaction'
uniprot xml
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
3
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1
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1.2k
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News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
4
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1
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1.2k
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News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
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0
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1.1k
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News: Discovering the world of the Long-read nanopore Sequencing
assembly Pacbio nanopore sequencing
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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815
views
News: UniProt: Change of line length in UniProtKB text format
uniprot
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
0
votes
1
reply
1.1k
views
News: Google Summer of Code 2020 announced for mentor organisations
internship GSoC
updated 11 months ago by 43k • written 4.4 years ago by 23k
2
votes
0
replies
774
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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748
views
News: Training in Computational Drug Design and Discovery @NIH,USA, January 21-24, 2020
Drug-design RNA-Seq genomics
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
0
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0
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733
views
News: BioC2020: mark your calendars!
conference Bioc2020
updated 11 months ago by 43k • written 4.5 years ago by 7.1k
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0
replies
794
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News: Training in Creating Plots, Graphs and Maps using R @ NIH
Graphs R Maps Plots
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
0
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1
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1.6k
views
News: :: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS RNA-Seq Training
updated 11 months ago by 43k • written 4.5 years ago by 11k
0
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0
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718
views
News: 3rd edition of single cell RNAseq course in Berlin
next-gen-sequencing R RNA-Seq
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
2
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0
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735
views
News: Course in Berlin: Data visualization IN R with ggplot2
dataviz R ggplot2 tidyverse
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
3
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0
replies
815
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
0
votes
0
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589
views
News: 2nd National Symposium on Database Development and Biocuration
Biocuration
updated 11 months ago by 43k • written 4.5 years ago by • 0
0
votes
0
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771
views
News: Webinar: Single Cell Multi-omics Data Analysis in Partek Flow - Visualization of CRISPR Data
CRISPR single-cell
updated 11 months ago by 43k • written 4.5 years ago by ▴ 30
0
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2
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707
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News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 11 months ago by 43k • written 4.5 years ago by 23k
0
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0
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1.0k
views
News: scRNA-seq data analysis course in Berlin
scRNAseq R RNA-Seq RNA
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
0
votes
0
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692
views
News: 5th edition of the POPULATION GENOMICS course in Berlin
R genome next-gen
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
1
vote
0
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702
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News: The precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling and Biomarker Discovery Challenge is now live!
brain-tumor machine-learning biomarkers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 150
0
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0
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805
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
sequence RNA-Seq training
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
0
votes
0
replies
827
views
News: Training in Bioinformatics for Beginners @NIH
sequence-analysis omics training
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
3
votes
0
replies
798
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News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 11 months ago by 43k • written 4.5 years ago by 11k
1
vote
0
replies
869
views
News: 7th International Conference on Artificial Intelligence and Applications (AIAPP 2020)
robot artificial-intelligence machine-learning
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
0
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0
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683
views
News: EMBL Course: Computing Skills For Reproducible Research: Software Carpentry
Computation
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
830
views
News: EMBL Course: Analysis and Integration of Transcriptome and Proteome Data
Data-analysis Proteomics Transcriptomics
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
891
views
News: EMBO Practical Course: Measuring Translational Dynamics by Ribosome Profiling
Ribosome-profiling Gene-expression
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
1.2k
views
News: EMBL Course: Quantitative Proteomics: Strategies and Tools to Probe Biology
Data-analysis Proteomics
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
1
reply
2.0k
views
News: Course: Introduction to GWAS (BERLIN)
GWAS R Python Snakemake
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.5k
0
votes
0
replies
774
views
News: EMBL Course: Circulating Tumour DNA in Clinical Applications
Liquid-biopsy Clinical-application Tumour-cells
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
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790
views
News: EMBL Course: Exploratory Analysis of Biological Data: Data Carpentry
Data-Analysis Exploratory-Analysis Biological-Data
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
699
views
News: EMBO | EMBL Symposium: Biological Oscillators: Design, Mechanism, Function
Oscillation Modelling Imaging
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
804
views
News: 5-day course on Metabolomics in Berlin
Metabolomics R
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.5k
731 results • Page 7 of 15
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Answer: RNAseq coverage vs depth for transcript isoform expression?
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C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
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Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Our resul…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by bk11 ★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
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