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News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
8 months ago by carlopecoraro2 ★ 2.2k
0
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0
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223
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News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
8 months ago by carlopecoraro2 ★ 2.2k
7
votes
1
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429
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
8 months ago by kzkedzierska ▴ 290
0
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0
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270
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News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
8 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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274
views
News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 6 weeks ago by 37k • written 8 months ago by ★ 2.2k
3
votes
1
reply
359
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 6 weeks ago by 37k • written 8 months ago by ▴ 60
0
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0
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273
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News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
8 months ago by carlopecoraro2 ★ 2.2k
0
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0
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248
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News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 6 weeks ago by 37k • written 8 months ago by ★ 2.2k
1
vote
0
replies
381
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News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 6 weeks ago by 37k • written 9 months ago by ▴ 10
0
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2
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527
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News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 180
0
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0
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186
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News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
9 months ago by PeterC_NCBI ▴ 180
1
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0
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261
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News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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343
views
News: Introduction to Nextflow course
Nextflow
9 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
299
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News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
9 months ago by David Langenberger 9.8k
6
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0
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328
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
9 months ago by kzkedzierska ▴ 290
0
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1
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314
views
News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 9 months ago by 21k • written 9 months ago by ★ 2.2k
3
votes
3
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704
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
9 months ago by David Langenberger 9.8k
0
votes
0
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845
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News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 6 weeks ago by 37k • written 9 months ago by ▴ 10
0
votes
0
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241
views
News: Virtual Genome Assembly Workshop : May 16-19, 2022
assembly Genome Workshop
9 months ago by singh.vijender ▴ 50
1
vote
0
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271
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News: Data visualization in Python course
Data Visualization Python
9 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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241
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News: Landscape Genomics in R course
LandscapeGenomics
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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256
views
News: Gene Set Enrichment Analysis in R workshop
GSE
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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229
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News: Conservation Genomics Workshop
ConservationGenomics
9 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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248
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News: A webinar about Harmony batch correction, by its author
scrna-seq single-cell rna-seq
9 months ago by Jennifer Pham ▴ 450
0
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1
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2.1k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 6 weeks ago by 37k • written 10 months ago by ▴ 210
0
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1
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763
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News: ::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq RNA-Seq Workshop
10 months ago by David Langenberger 9.8k
1
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0
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248
views
News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 6 weeks ago by 37k • written 10 months ago by ★ 2.2k
0
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1
reply
365
views
News: 6th Berlin Summer School in NGS Data Analysis (June 13-17, 2022)
RNAseq DNAseq transcriptomics
10 months ago by David Langenberger 9.8k
0
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0
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231
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News: Cellosaurus release 41 is available
biocuration knowledgebase cell news line databases
10 months ago by Amos Bairoch ▴ 110
0
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0
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229
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News: RNAseq workshop (Model Species) : April4-7, 2022
RNAseq Model species Workshop
10 months ago by singh.vijender ▴ 50
1
vote
0
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361
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News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 6 weeks ago by 37k • written 10 months ago by 9.8k
0
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0
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267
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News: 4th edition of the GWAS course
GWAS
10 months ago by carlopecoraro2 ★ 2.2k
0
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0
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257
views
News: Course - An introduction to Nanopore direct RNA Sequencing
NanoporeDirectRNAseq
11 months ago by carlopecoraro2 ★ 2.2k
3
votes
0
replies
544
views
News: Nextflow Slack Channel
nextflow slack
11 months ago by ATpoint 68k
0
votes
0
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285
views
News: Reproducible Analysis With R course
Reproducibility
11 months ago by carlopecoraro2 ★ 2.2k
8
votes
1
reply
975
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 11 months ago by ★ 22k • written 12 months ago by 125k
0
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0
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274
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News: Reproducible data science with R course
R
11 months ago by carlopecoraro2 ★ 2.2k
0
votes
1
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674
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News: ::LAST CALL:: RNA-Seq Data Analysis Workshop, February 28 - March 3, 2022 in Berlin
RNAseq Transcriptomics RNA
11 months ago by David Langenberger 9.8k
0
votes
0
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273
views
News: Machine Learning in R - course
MachineLearning
11 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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227
views
News: Paleobiology in R: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY - course
Paleobiology
11 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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269
views
News: Meta-analysis in R course
Meta-analysis
11 months ago by carlopecoraro2 ★ 2.2k
2
votes
2
replies
459
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
12 months ago by SanjidaR_NCBI ▴ 20
1
vote
0
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285
views
News: 2-day Snakemake course with Johannes Köster
Snakemake
12 months ago by carlopecoraro2 ★ 2.2k
1
vote
0
replies
290
views
News: NIAID Data Ecosystem Survey
data ecosytem survey researcher
updated 12 months ago by 125k • written 12 months ago by ▴ 10
0
votes
0
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289
views
News: Gene regulation and epigenomics course
Epigenomics
12 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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308
views
News: Course: Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
Metagenomics
12 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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282
views
News: SEX CHROMOSOME EVOLUTION course
SexChromosome
12 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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345
views
News: Last 2 seats in the PYTHON PROGRAMMING FOR DATA ANALYSIS course
Python
12 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
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345
views
News: single-cell RNA-seq analysis course
scRNAseq
12 months ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
483
views
News: Genome Assembly using Oxford Nanopore Sequencing Course
Nanopore Oxford Sequencing
12 months ago by carlopecoraro2 ★ 2.2k
1,000 results • Page 3 of 20
Recent Votes
A: Using ColSums vs sizeFactors in read count normalization
Comment: a problem with getBM
C: Reorder heatmap rows in a dataset with missing values
A: Difference between GTF file with CHR and without CHR. ENSEMBL
Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
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Teacher to ATpoint 68k
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Recent Replies
Answer: how to do a reliable single cell sequencing analysis? by ATpoint 68k
The usual approach for starters would be to follow guided and well-accepted tutorials. That would (incomplete list) be: - The Biocon…
Answer: a problem with getBM by sanaz • 0
head(ensembl_ids) X baseMean log2FoldChange lfcSE stat pvalue padj 1 ENSG00000000938.13 1344.2587 2.107…
Answer: Recommendations needed for a tool for comparative gene set enrichment analyses v by fuellen ▴ 20
Hello and Thanks! OK, I should have written "The gene lists I have prepared" instead of "The DEG lists I have prepared". In any case, is …
Comment: a problem with getBM by Mike Smith ★ 1.9k
Can you update your post to show some examples of what's in your `ensembl_ids` object? Perhaps the contents of `head(ensembl_ids)`. It's …
Answer: trainGlimmerHMM Error while training a genome by congliu37 • 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
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