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News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
RNA-Seq ChIP-Seq ATAC-seq
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
0
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0
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488
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News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 8 months ago by 43k • written 11 months ago by ★ 2.5k
0
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0
replies
841
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News: Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course Python Machine-learning
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
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0
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1.4k
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News: Hands-on machine learning workshop for biomedical data
genome machine-learning
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
2
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0
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945
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News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
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0
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1.6k
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News: Registration deadline for 2017 CBW bioinformatics workshops is fast approaching
SNP ChIP-Seq Assembly RNA-Seq R
updated 11 months ago by 43k • written 7.1 years ago by ▴ 30
0
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0
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834
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News: EMBL Conference: Expanding the Druggable Proteome with Chemical Biology
pharmacology proteome chemical-biology genetics
updated 10 months ago by 43k • written 4.7 years ago by ▴ 10
0
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0
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660
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News: Interested in Genomic Data Visualization?
R RNA-Seq next-gen
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
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0
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699
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News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
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0
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649
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News: precisionFDA is launching the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions on May 1st!
gene genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
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0
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705
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News: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 10 months ago by 43k • written 4.5 years ago by ▴ 10
0
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0
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1.1k
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News: 3rd World Conference on Breast and Cervical Cancer
Cervical-Cancer breast-cancer oncology
updated 11 months ago by 43k • written 6.1 years ago by • 0
0
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0
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391
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News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
3
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1.8k
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News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 10 months ago by 43k • written 3.9 years ago by 141k
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1.0k
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News: Data Science with Gen3 - Using Jupyter Notebooks
sequence genome Jupyter Notebooks
updated 11 months ago by 43k • written 4.9 years ago by ▴ 10
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0
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674
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News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
2
votes
0
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917
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News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
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0
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358
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News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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806
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News: EMBL Conference: From Functional Genomics to Systems Biology
Proteomics Genomic Systems-biology Chromatin
updated 10 months ago by 43k • written 4.6 years ago by ▴ 10
1
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736
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News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 40
1
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0
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999
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News: Phylogenomics course in Berlin
next-gen SNP
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
0
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0
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721
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News: Training in Computational Drug Design and Discovery @NIH,USA, January 21-24, 2020
Drug-design RNA-Seq genomics
updated 10 months ago by 43k • written 4.4 years ago by ▴ 140
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0
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1.1k
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News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
1
vote
0
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437
views
Spam: Research Training in Next-Generation Sequencing Data Analysis.
RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 3.7 years ago by 10
0
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0
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1.1k
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News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data
GSA R RNA-Seq
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
0
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0
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2.2k
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News: Course "Assembly and Annotation of genomes"
Assembly RNA-Seq mapping genome annotation
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
3
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0
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1.3k
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News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.5k
0
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0
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767
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News: EMBL Course: Circulating Tumour DNA in Clinical Applications
Liquid-biopsy Clinical-application Tumour-cells
updated 10 months ago by 43k • written 4.5 years ago by ▴ 10
1
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0
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504
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News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
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0
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442
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News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
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234
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News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 9 weeks ago by 141k • written 9 weeks ago by • 0
0
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0
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189
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News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 10 weeks ago by 141k • written 10 weeks ago by ▴ 10
0
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0
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1.7k
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News: Metagenomics Workshop in October 2017 in Frankfurt, Germany
NGS workshop metagenomics
updated 11 months ago by 43k • written 6.9 years ago by 11k
0
votes
0
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143
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News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 11 days ago by 43k • written 11 days ago by ▴ 380
1
vote
0
replies
718
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News: Training - Data visualization in R with ggplot2
R Dataviz ggplot2
updated 10 months ago by 43k • written 3.6 years ago by ★ 2.5k
0
votes
0
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818
views
News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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671
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
168
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News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 29 days ago by 43k • written 29 days ago by ★ 2.5k
0
votes
0
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785
views
News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
votes
0
replies
154
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News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
1
vote
0
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174
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 18 days ago by 43k • written 20 days ago by ★ 2.5k
2
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0
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115
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News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
16 days ago by Transmitting Science communication ▴ 70
0
votes
0
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354
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News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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278
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News: Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R Gene-Set-Enrichment-Analysis GSEA Bioconductor
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
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376
views
News: Course - Flow Cytometry analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
854
views
News: Comparative Genomics (Berlin, 1-5 October 2018)
Assembly SNP alignment SV
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
0
votes
0
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383
views
News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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772
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News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Biomedical Programming
updated 10 months ago by 43k • written 4.3 years ago by ▴ 140
0
votes
0
replies
607
views
News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
votes
0
replies
482
views
News: GWAS course in June
GWAS
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
900 results • Page 5 of 18
Recent Votes
Comment: Heatmap and rna-seq
Answer: Heatmap and rna-seq
Comment: Heatmap and rna-seq
A: should FASTA files be sorted before indexed with SAMtools?
Answer: A faidx-indexed FASTA format file or a FASTA format file
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: Create a new bed file with all pairwise combinations between two other bed files
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Scholar to Alex Reynolds 35k
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Recent Replies
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR? by Gordon Smyth ★ 7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1. Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu by Gordon Smyth ★ 7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing by cao510927 ▴ 30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files by Alex Reynolds 35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data by bk11 ★ 2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq by GenoMax 141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Answer: Heatmap and rna-seq by dsull ★ 5.8k
Check out clustergrammer from Avi Ma'ayan's lab.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by Ram 43k
Simple: ```r data <- lapply(files, read_tsv) data <- Reduce(merge, data) # or Reduce(full_join, data) ``` <a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i by ATpoint 82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by BioinfGuru ★ 1.7k
Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon by i.sudbery 19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt by sapuizait ▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
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