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1,000 results • Page 5 of 20
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News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 6 months ago by 41k • written 4.6 years ago by ▴ 580
6
votes
2
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1.5k
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News: Biostars On The Genome Technology Cover
biostars
updated 9 months ago by 41k • written 10.9 years ago by 99k
3
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2
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1.1k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 6 months ago by 41k • written 5.5 years ago by ★ 3.0k
0
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2
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3.3k
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News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 6 months ago by 41k • written 6.3 years ago by ★ 2.4k
0
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2
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1.9k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 6 months ago by 41k • written 5.9 years ago by 136k
2
votes
2
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2.1k
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News: De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
Assembly RNA-Seq
updated 7 months ago by 41k • written 7.4 years ago by ▴ 400
6
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2
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1.7k
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News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 9 months ago by 41k • written 11.0 years ago by 11k
1
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2
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1.7k
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News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen GATB
updated 7 months ago by 41k • written 7.2 years ago by ▴ 140
6
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2
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2.5k
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News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 7 months ago by 41k • written 7.0 years ago by 10k
6
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2
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1.0k
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News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 6 months ago by 41k • written 4.8 years ago by ★ 2.3k
5
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2
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4.5k
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News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 9 months ago by 41k • written 6.9 years ago by 7.5k
0
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1
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1.6k
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News: Webinar Series: Diving Deep into Next Generation Sequencing (NGS) Data Analysis
NGS sangenix webinar
updated 7 months ago by 41k • written 7.1 years ago by ▴ 750
16
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1
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4.8k
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News: Samtools/htslib/bcftools 1-3 released
htslib samtools bcftools
updated 8 months ago by 41k • written 8.0 years ago by 104k
6
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1
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968
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 6 months ago by 41k • written 5.9 years ago by ★ 2.3k
2
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1
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1.3k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 6 months ago by 41k • written 6.5 years ago by ▴ 610
3
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1
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2.2k
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News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 6 months ago by 41k • written 6.1 years ago by 158k
1
vote
1
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856
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News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 9 months ago by 41k • written 2.9 years ago by ★ 2.4k
3
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1
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1.4k
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News: Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 9 months ago by 41k • written 10.0 years ago by 158k
0
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1
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646
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
7 weeks ago by David Langenberger 10k
6
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1
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2.8k
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News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 9 months ago by 41k • written 9.6 years ago by 11k
0
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1
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1.5k
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News: :: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS RNA-Seq Training
updated 5 months ago by 41k • written 4.0 years ago by 10k
5
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1
reply
2.8k
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News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 9 months ago by 41k • written 10.0 years ago by 20k
6
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1
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1.9k
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News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 9 months ago by 41k • written 9.9 years ago by 10k
0
votes
1
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780
views
News: Do you want to improve your knowledge and skills in the R programming language?
R Programming
updated 6 months ago by 41k • written 4.6 years ago by ★ 2.4k
0
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1
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1.4k
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News: Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants RNA-Seq alignment Strand-NGS
updated 6 months ago by 41k • written 5.8 years ago by ▴ 70
1
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1
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2.5k
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News: R package PopGenome: http://popgenome.weebly.com/
R population-genomics popgenome VCF
updated 8 months ago by 41k • written 8.6 years ago by ▴ 50
3
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1
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6.6k
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News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 6 months ago by 41k • written 6.0 years ago by 136k
0
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1
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1.5k
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News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs RADseq
updated 6 months ago by 41k • written 6.1 years ago by ★ 2.4k
0
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1
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1.3k
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News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 5 months ago by 41k • written 3.6 years ago by 10k
0
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1
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910
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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
7 weeks ago by David Langenberger 10k
4
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1
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2.1k
views
News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 11 months ago by 41k • written 8.9 years ago by 20k
0
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1
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1.2k
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News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 6 months ago by 41k • written 4.9 years ago by ★ 2.4k
1
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1
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1.6k
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News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 6 months ago by 41k • written 5.7 years ago by 10k
0
votes
1
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101
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News: Course: Genome Assembly and Annotation
GenomeAssembly GenomeAnnotation Longreads Bioinformatics Biodiversity
updated 1 day ago by ▴ 30 • written 1 day ago by ★ 2.4k
2
votes
1
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1.9k
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News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 6 months ago by 41k • written 6.4 years ago by ★ 2.4k
0
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1
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681
views
News: Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning Health-Informatics
updated 6 months ago by 41k • written 5.1 years ago by ▴ 20
0
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1
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469
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News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 10 months ago by 41k • written 11 months ago by ★ 2.4k
6
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1
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2.8k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 6 months ago by 41k • written 4.6 years ago by 158k
11
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1
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2.0k
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News: Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop Assembly RNA-Seq
updated 7 months ago by 41k • written 7.5 years ago by 10k
3
votes
1
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768
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 6 months ago by 41k • written 4.5 years ago by ▴ 150
5
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1
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1.5k
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News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 6 months ago by 41k • written 5.5 years ago by ★ 2.4k
2
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1
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2.5k
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News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 5 months ago by 41k • written 3.7 years ago by ★ 2.4k
0
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1
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1.5k
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News: Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen Assembly RNA-Seq
updated 6 months ago by 41k • written 6.7 years ago by ★ 2.4k
0
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1
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1.2k
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 9 months ago by 41k • written 2.8 years ago by 10k
2
votes
1
reply
1.9k
views
News: New NPG journal "Human Genome Variation"
journal SNP variation
updated 8 months ago by 41k • written 9.1 years ago by 158k
3
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1
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2.4k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 9 months ago by 41k • written 10.8 years ago by 158k
0
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1
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323
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News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 9 months ago by 41k • written 9 months ago by ★ 2.4k
3
votes
1
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1.3k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 6 months ago by 41k • written 6.7 years ago by 23k
0
votes
1
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1.0k
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
DNA-Seq Workshop RNA-Seq
updated 9 months ago by 41k • written 2.9 years ago by 10k
0
votes
1
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913
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News: Genomic bioinformatics service provider
next-gen-sequencing genome RNA-Seq ChIP-Seq
updated 6 months ago by 41k • written 5.0 years ago by • 0
1,000 results • Page 5 of 20
Recent Votes
Answer: GO categorization
Comment: Using metagenome assembly and binning to identify and mitigate contamination in
Answer: GO categorization
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
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Popular Question to beausoleilmo ▴ 560
Commentator to Brian Bushnell 19k
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Recent Replies
Answer: "MethylKit" package for WGBS data by viveksomya123 • 0
Why I am getting this histogram of CpG coverage using methylkit, is this the failure of bisulfite library preparation![enter image descript…
Comment: Should I scale all genes in single cell Seurat? by synat.keam ▴ 80
Thanks, António for your kind and detailed responses. You helped clear my doubt about scaling! Kind Regards, Synat
Comment: Using metagenome assembly and binning to identify and mitigate contamination in by Brian Bushnell 19k
It's not a silly question! And yes, it can be done. JGI is currently testing various binning tools to try to find the best protocol for t…
Answer: GO categorization by geneontologyhelp ▴ 270
[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
Comment: Problematic fastq files...How can we trust them? by blackadder ▴ 30
Thanks for the feedback fellas! I agree with the aforementioned!
Comment: Which program, tool, or strategy do you use to visualize genomic rearrangements? by cmdcolin ★ 3.4k
i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
Answer: The number of variations in the pan-genome is reduced compared to the variations by Jordan M Eizenga ▴ 410
If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
Answer: How to find node Postion and source(sample) ? by Jordan M Eizenga ▴ 410
You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
Comment: How Can I move the scattered dots more closer into the center of box ? by Brian Bushnell 19k
I would just draw them in by hand where you want them.
Comment: How to identify CG, CHG, or CHH from MeDIP data by Tm ★ 1.1k
I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too? We tried using Q…
Comment: Problematic fastq files...How can we trust them? by Brian Bushnell 19k
I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
Answer: Finding human .vcf files online to download by cmdcolin ★ 3.4k
---------- some common ones include 1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ …
Comment: GO categorization by m.habib • 0
Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp by jv ★ 1.2k
I wonder if using cell hashing, which would allow pooling of cells from multiple samples before droplet formation, could improve things her…
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands? by Malachi Griffith 19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
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