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News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
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649
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News: precisionFDA is launching the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions on May 1st!
gene genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
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0
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945
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News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
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917
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News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
1
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0
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503
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News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
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0
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442
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News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
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0
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607
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News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
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0
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482
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News: GWAS course in June
GWAS
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
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0
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671
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News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
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0
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837
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News: Course. Squeezing biology out of statistics: Gene set and pathway analysis in HT data
R RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
0
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0
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278
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News: Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R Gene-Set-Enrichment-Analysis GSEA Bioconductor
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
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0
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692
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News: EMBO | EMBL Symposium: Biological Oscillators: Design, Mechanism, Function
Oscillation Modelling Imaging
updated 10 months ago by 43k • written 4.5 years ago by ▴ 10
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0
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785
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News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
0
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0
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353
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News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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440
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News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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1.7k
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News: Metagenomics Workshop in October 2017 in Frankfurt, Germany
NGS workshop metagenomics
updated 11 months ago by 43k • written 6.9 years ago by 11k
0
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0
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818
views
News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
1
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0
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718
views
News: Training - Data visualization in R with ggplot2
R Dataviz ggplot2
updated 10 months ago by 43k • written 3.6 years ago by ★ 2.5k
0
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0
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721
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News: Training in Computational Drug Design and Discovery @NIH,USA, January 21-24, 2020
Drug-design RNA-Seq genomics
updated 10 months ago by 43k • written 4.4 years ago by ▴ 140
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0
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1.1k
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News: 3rd World Conference on Breast and Cervical Cancer
Cervical-Cancer breast-cancer oncology
updated 11 months ago by 43k • written 6.1 years ago by • 0
0
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0
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811
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News: TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK PRSice GWAS R Genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
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0
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660
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News: Interested in Genomic Data Visualization?
R RNA-Seq next-gen
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
0
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0
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834
views
News: EMBL Conference: Expanding the Druggable Proteome with Chemical Biology
pharmacology proteome chemical-biology genetics
updated 10 months ago by 43k • written 4.7 years ago by ▴ 10
0
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0
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391
views
News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
3
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1.8k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 10 months ago by 43k • written 3.9 years ago by 141k
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0
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1.0k
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News: Data Science with Gen3 - Using Jupyter Notebooks
sequence genome Jupyter Notebooks
updated 11 months ago by 43k • written 4.9 years ago by ▴ 10
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0
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674
views
News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
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488
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News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 8 months ago by 43k • written 11 months ago by ★ 2.5k
0
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0
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358
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News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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806
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News: EMBL Conference: From Functional Genomics to Systems Biology
Proteomics Genomic Systems-biology Chromatin
updated 10 months ago by 43k • written 4.6 years ago by ▴ 10
1
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0
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736
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News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 40
1
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0
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999
views
News: Phylogenomics course in Berlin
next-gen SNP
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
0
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0
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854
views
News: Comparative Genomics (Berlin, 1-5 October 2018)
Assembly SNP alignment SV
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
0
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0
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1.1k
views
News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
1
vote
0
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437
views
Spam: Research Training in Next-Generation Sequencing Data Analysis.
RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 3.7 years ago by 10
0
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0
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1.1k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data
GSA R RNA-Seq
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
0
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0
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2.2k
views
News: Course "Assembly and Annotation of genomes"
Assembly RNA-Seq mapping genome annotation
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
3
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0
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1.3k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.5k
0
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0
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845
views
News: Training in Cloud Computing For Biomedical Researchers@NIH
cloud-computing RNA-Seq next-gen biology
updated 11 months ago by 43k • written 5.1 years ago by ▴ 140
0
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0
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1.3k
views
News: Programming for Biomedical Researchers @NIH, USA, Nov 28-Dec 1, 2017
reseachers program training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
0
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0
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355
views
News: Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
2
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0
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1.3k
views
News: April Galaxy News: UseGalaxy.org gets siblings; GCC Deadlines; GCCBOSC Childcare...
bosc galaxy events
updated 11 months ago by 43k • written 6.0 years ago by ▴ 610
0
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0
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1.1k
views
News: 4th International Conference on Advances in Biotechnology and Bioscience (Adv.Biotech 2018)
Adv.Biotech-2018 Biotechnology Bioscience
updated 11 months ago by 43k • written 5.8 years ago by • 0
0
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0
replies
189
views
News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 10 weeks ago by 141k • written 10 weeks ago by ▴ 10
0
votes
0
replies
321
views
News: Bayesian Data Analysis in R course
R Bayesian-Statistics
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
replies
143
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 11 days ago by 43k • written 11 days ago by ▴ 380
0
votes
0
replies
184
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
2
votes
0
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125
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 15 days ago by 43k • written 15 days ago by ▴ 70
0
votes
0
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185
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
1
vote
0
replies
839
views
News: Ensembl launches COVID-19 resource
genome coronavirus COVID-19 ensembl SARS-CoV-2
updated 10 months ago by 43k • written 3.9 years ago by ▴ 330
900 results • Page 5 of 18
Recent Votes
A: should FASTA files be sorted before indexed with SAMtools?
Answer: A faidx-indexed FASTA format file or a FASTA format file
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: Create a new bed file with all pairwise combinations between two other bed files
Answer: Create a new bed file with all pairwise combinations between two other bed files
Answer: Create a new bed file with all pairwise combinations between two other bed files
Answer: Create a new bed file with all pairwise combinations between two other bed files
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Scholar to Alex Reynolds 35k
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Recent Replies
Answer: How to use limma to find differentially expressed genes in response to a continu by Gordon Smyth ★ 7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing by cao510927 ▴ 30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files by Alex Reynolds 35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data by bk11 ★ 2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq by GenoMax 141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Answer: Heatmap and rna-seq by dsull ★ 5.8k
Check out clustergrammer from Avi Ma'ayan's lab.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by Ram 43k
Simple: ```r data <- lapply(files, read_tsv) data <- Reduce(merge, data) # or Reduce(full_join, data) ``` <a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i by ATpoint 82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by BioinfGuru ★ 1.7k
Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon by i.sudbery 19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt by sapuizait ▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question by bk11 ★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
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