Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
1,000 results • Page
1 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
5
views
Alternatives to ProtExcluder in repeat annotation/MAKER?
repeats
esl-fetch
annotation
ProtExcluder
MAKER
30 minutes ago by
evoecogen
▴ 20
0
votes
2
replies
81
views
Miseq mothur error with SOP in galaxy - Help please!
mothur
miseq
16s
Galaxy
sop
updated 1 hour ago by
colindaven
4.4k • written 4 hours ago by
Melissa
• 0
0
votes
2
replies
63
views
Find corresponding branch from gene tree in species tree
phylogeny
family-tree
gene
species
phylogenetics
22 minutes ago by
Charlotte West
▴ 40
0
votes
2
replies
88
views
How can I creating multisample VCF file ?
VCF
updated 2 hours ago by
Ram
38k • written 6 hours ago by
eennadi
▴ 20
0
votes
0
replies
59
views
How to identify the batch informations from the sample ID?
batch-correction
TCGAbatch
DESeq2
TCGA
updated 2 hours ago by
Ram
38k • written 7 hours ago by
dare_devil
★ 1.7k
0
votes
1
reply
65
views
Adaptor sequences in GIAB samples
illumina
GIAB
adaptor
cutadapt
updated 6 hours ago by
GenoMax
125k • written 7 hours ago by
Mk
▴ 10
0
votes
3
replies
101
views
pileup consolidation tool
RNAseq
pileup
jacusa
samtools
8 hours ago by
joe
▴ 380
0
votes
2
replies
148
views
How I know the genome assembly quality by the low coverage Pacbio data ?
genome
Pacbio
8 hours ago by
wdpang
• 0
0
votes
1
reply
69
views
Stringtie prepDE.py script
deseq2
stringtie
updated just now by
Buffo
★ 2.0k • written 15 hours ago by
Aiswarya
• 0
0
votes
2
replies
112
views
Averaging across multiple proteomic experiments
statistics
proteomics
R
updated 2 hours ago by
ATpoint
69k • written 15 hours ago by
bhumm
▴ 20
0
votes
2
replies
135
views
Copy Number Variants, where to start?
CNV
annotation
2 hours ago by
paolo
▴ 60
0
votes
0
replies
79
views
mosdepth coverage & transcripts per million
TPM
coverage
metagenome
mosdepth
18 hours ago by
hannahf
• 0
0
votes
2
replies
134
views
FATAL: While performing build: build image size <= 0 - Issues With Singularity
R
Docker
Singularity
3 hours ago by
Indira
• 0
0
votes
1
reply
105
views
Methods for downsampling coverage in a VCF
BCFTools
downsampling
WGS
sequencing
GATK
1 hour ago by
a
• 0
0
votes
0
replies
83
views
Questions about HVGs and HEGs in single cell research
single-cell
machine-learning
updated 19 hours ago by
Ram
38k • written 20 hours ago by
me
• 0
0
votes
0
replies
75
views
average expression function and pct
seurat
average
pct
expression
and
20 hours ago by
rasing02
• 0
0
votes
0
replies
82
views
GoSemSIm - function mgeneSim() is resulting in similarity matrix without 1s od diagonal
vs
Gosim
GoSemSIm
21 hours ago by
eliska.ochodkova
• 0
0
votes
2
replies
151
views
Error with FindConservedMarkers()
FindConservedMarkers
22 hours ago by
Chris
▴ 60
0
votes
0
replies
90
views
Extract different variants of a vcf file comparing to other vcf files
gatk
bedtools
mutect2
vcftools
variant
5 hours ago by
minoo
▴ 10
0
votes
3
replies
196
views
BWA-mem not working with Snakemake + singularity
snakemake
bwa
singularity
updated 1 day ago by
Jeremy Leipzig
21k • written 1 day ago by
brunobsouzaa
▴ 800
6
votes
4
replies
154
views
Equivalent to SeqMan alignment tool
SeqMan
alignments
1 day ago by
A_heath
▴ 120
0
votes
6
replies
227
views
Issue in import files in Metaboanalyst
file
import
vector
Metaboanalyst
atomic
1 day ago by
Andrea
▴ 10
0
votes
0
replies
102
views
database for better classification of illumina contigs
classification
illumina
contigs
NR
updated 1 day ago by
GenoMax
125k • written 1 day ago by
sapuizait
▴ 10
0
votes
3
replies
192
views
How to unzip a file with .bgz extention
.bgz
unzip
updated 1 day ago by
GenoMax
125k • written 1 day ago by
taniamahmood38
▴ 20
0
votes
0
replies
109
views
FWS calculation using plink data
vcf
Fws
Plink
1 day ago by
anithanagaraj93
• 0
0
votes
0
replies
114
views
qPCR missing data
Bioconductor
Analysis
Expression
qPCR
1 day ago by
Prerna
• 0
0
votes
0
replies
93
views
imputing haplotypes from variants in a VCF file - vcfIndexFile
practical
graph
haplotype
vcf
imputation
PHG
1 day ago by
matt.shenton
▴ 40
0
votes
0
replies
101
views
Pathway Analysis for Cancer Spatial Transcriptomics Characterization
Spatial
Pathway
Oncology
Transcriptomics
Enrichment
updated 1 day ago by
GenoMax
125k • written 1 day ago by
Flemming
• 0
1
vote
1
reply
140
views
difference between chip-seq and association study
association
chip-seq
TWAS
updated 1 day ago by
seidel
10k • written 1 day ago by
rheab1230
▴ 120
0
votes
1
reply
144
views
gff2bed fails with "Non-numeric start coordinate. "
bedops
updated 1 day ago by
Jimmy
• 0 • written 1 day ago by
scottbrainard
▴ 50
0
votes
0
replies
103
views
Using bigWigCompare to correct for input signal
chip
input
peaks
bigwig
deeptools
23 hours ago by
Maycon
• 0
0
votes
0
replies
99
views
Trying to understand the difference between between these two HGVS
hgvs
1 day ago by
curious
▴ 720
0
votes
0
replies
102
views
RagTag patch error--"tuple index out of range"
correction
ragtag
scaffolding
1 day ago by
schmiggle
• 0
0
votes
0
replies
105
views
network alignment and network regression
network
1 day ago by
Bogdan
★ 1.3k
0
votes
0
replies
99
views
Can't convert paired end BAM to bed using bedtools
BAM
BEDPE
updated 1 day ago by
GenoMax
125k • written 1 day ago by
oksana03fel
• 0
0
votes
0
replies
101
views
Why does bcftools call from different max-depth (-d) value in mpileup give inconstant GT values?
mpileup
pileup
vcf
calling
bcftools
variant
1 day ago by
magnolia
▴ 20
0
votes
1
reply
201
views
MetaboAnalyst: Interpreting Enrichment Analysis Results
enrichment
metabolomics
2 days ago by
eva_u
▴ 10
0
votes
4
replies
200
views
geom_errorbar not dodging or producing horizontal line
ggplot2
geom_errorbar
updated 1 day ago by
FrankStarling
▴ 30 • written 2 days ago by
bsp017
▴ 40
3
votes
5
replies
206
views
Size of two scRNA-Seq conditions
scRNA-Seq
1 day ago by
Chris
▴ 60
0
votes
0
replies
78
views
Mapping IDs to systematic names (GOSim, setevidencelevel() )
GOSim
1 day ago by
eliska.ochodkova
• 0
0
votes
1
reply
114
views
Novogene somatic results with GATK mutect2
Mutect2
Novogene
GATK
somatic
VCF
updated 2 days ago by
GenoMax
125k • written 2 days ago by
chrisgr
▴ 20
2
votes
5
replies
211
views
fastqc: Per base sequence content
illumina
metagenomic
fastqc
1 day ago by
khoojj
• 0
0
votes
0
replies
100
views
A question about Bioinformatik analysis and experimental design / comparing 2 experiments
DEseq2
Batch-effect
updated 2 days ago by
Ram
38k • written 2 days ago by
Frederik
• 0
0
votes
0
replies
107
views
Input data for LIMMA: unnormalised or vsn or other?
lima
normalisation
vns
2 days ago by
Sebastian Hesse
▴ 320
0
votes
0
replies
94
views
question of exonerate output
protein
gff
exonerate
annotation
2 days ago by
TN
• 0
0
votes
0
replies
112
views
Mis-paired primers
amplicon
primers
Mis-paired
2 days ago by
Sara
▴ 10
0
votes
0
replies
108
views
show amplicon like exon in UCSC/IGV
amplicon
2 days ago by
Sara
▴ 10
0
votes
2
replies
187
views
scATAC-seq workflow
Signac
scATAC-seq
2 days ago by
bioinformatics.girl
• 0
0
votes
0
replies
134
views
Set Y limits for ggplot with sec.axis
rstudio
ggplot
3 days ago by
JirMan
• 0
0
votes
1
reply
142
views
Filter InterProScan output for a specific function
interproscan
annotation
updated 2 days ago by
jv
▴ 800 • written 3 days ago by
Purger
• 0
1,000 results • Page
1 of 20
Recent Votes
Answer: Using Entrez Utilities to query the Nucleotide database by collection_date
Comment: Subbmission Data
Comment: Subbmission Data
Answer: Subbmission Data
Answer: how I can install lumi, plier, simpleaffy, oligo classes, LMGene and siggens pac
Comment: Bacterial metatranscriptomics with DESEQ2?
C: How to extend contigs from single-end reads?
Recent Locations •
All
Canada,
just now
Bologna,
just now
United States,
1 minute ago
Stony Brook University, NY,
2 minutes ago
University of Cape Town,
2 minutes ago
United States,
2 minutes ago
United States,
3 minutes ago
Recent Awards •
All
Popular Question
to
epaminonda
▴ 10
Popular Question
to
Elisabeth Gasteiger
★ 2.2k
Popular Question
to
mathavanbioinfo
▴ 70
Popular Question
to
cgds
▴ 10
Teacher
to
Basti
★ 1.3k
Teacher
to
shenwei356
7.8k
Scholar
to
GenoMax
125k
Recent Replies
Comment: Using Entrez Utilities to query the Nucleotide database by collection_date
by
anomalous.lexeme
• 0
That looks pretty useful. I'll give that a try as well. Thank you very kindly for the help.
Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
by
Juke34
7.5k
This script does not exist anymore in recent releases. Without any example I cannot help.
Comment: Create de novo repeat library
by
evoecogen
▴ 20
Are there any alternatives to ProtExcluder? I suddenly started to have problems with v1.2: The files blastx.out.fnolowm50seqm and blastx.o…
Comment: Find corresponding branch from gene tree in species tree
by
Charlotte West
▴ 40
Following your suggestion I've been playing around with Notung and seems like its got a lot of great features. I ran: ``` java -jar notung …
Comment: how to get an average ROC curve after 10-fold cross validation in r
by
Lisa
• 0
thanks for your help
Comment: docker build Command Works Yet It Does Not Create A Docker Container
by
Indira
• 0
So - I am trying to get around proxy issues but essentially installing required packages in a docker/sif then trying to use that to run an …
Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
by
Ram
38k
Do not add answers unless you're **answering** the top level question. Use `Add Comment` or `Add Reply` instead as appropriate. I've moved …
Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
by
BioinfoBee
• 0
@juke34 I tried the agat_sp_gxf_to_gff3.pl to sort the gff3 by their chromosome order but doesn't seems to work. Any suggestions?.
Comment: CNV Prediction Tools
by
Quentin M
▴ 60
Give a try to [CODEX2][1] [1]: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1578-y
Comment: Problem with tximport and plasmodium falciparum
by
bioinfo
▴ 20
Thank you. It does not seem to be that. I changed my script a bit. Now it looks like shown below: mart <- biomaRt::useMart("protists_…
Comment: Copy Number Variants, where to start?
by
paolo
▴ 60
I have found autoCNV, inCNV, and ClassifyCNV. The second one is for exomic CNVs only, and the third one does not run on Windows, but it mig…
Comment: BLAST reference genome indexing
by
GenoMax
125k
That is correct.
Comment: BLAST reference genome indexing
by
bhumm
▴ 20
Thanks for the explanation and links. So when calling the database in the for use, I call the prefix of all the 'subfiles' which invokes th…
Comment: Averaging across multiple proteomic experiments
by
bhumm
▴ 20
It is two biological replicates. I reasoned it as increasing N=2. For both biological replicates, it is ~13 controls vs ~13 disease conditi…
Comment: How to summarize the expression of a gene when having expression data from diffe
by
i.sudbery
16k
tximport will calculate the weighted effective transcript length, but it doesn't use that in its calculation of gene level expression. Both…
Traffic: 2490 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6