30 minutes ago by
evoecogen
▴
20
0
votes
0
replies
5
views
0
votes
2
replies
81
views
0
votes
2
replies
63
views
22 minutes ago by
Charlotte West
▴
40
0
votes
2
replies
88
views
0
votes
0
replies
59
views
updated 2 hours ago by
Ram
38k
•
written 7 hours ago by
dare_devil
★
1.7k
0
votes
1
reply
65
views
0
votes
3
replies
101
views
0
votes
2
replies
148
views
0
votes
1
reply
69
views
0
votes
2
replies
112
views
0
votes
2
replies
135
views
2 hours ago by
paolo
▴
60
0
votes
0
replies
79
views
18 hours ago by
hannahf
•
0
0
votes
2
replies
134
views
0
votes
1
reply
105
views
1 hour ago by
a
•
0
0
votes
0
replies
83
views
0
votes
0
replies
75
views
0
votes
0
replies
82
views
0
votes
2
replies
151
views
22 hours ago by
Chris
▴
60
0
votes
0
replies
90
views
0
votes
3
replies
196
views
updated 1 day ago by
Jeremy Leipzig
21k
•
written 1 day ago by
brunobsouzaa
▴
800
6
votes
4
replies
154
views
1 day ago by
A_heath
▴
120
0
votes
6
replies
227
views
0
votes
0
replies
102
views
0
votes
3
replies
192
views
updated 1 day ago by
GenoMax
125k
•
written 1 day ago by
taniamahmood38
▴
20
0
votes
0
replies
109
views
1 day ago by
anithanagaraj93
•
0
0
votes
0
replies
114
views
1 day ago by
Prerna
•
0
0
votes
0
replies
93
views
0
votes
0
replies
101
views
1
vote
1
reply
140
views
0
votes
1
reply
144
views
updated 1 day ago by
Jimmy
•
0
•
written 1 day ago by
scottbrainard
▴
50
0
votes
0
replies
103
views
0
votes
0
replies
99
views
0
votes
0
replies
102
views
1 day ago by
schmiggle
•
0
0
votes
0
replies
105
views
0
votes
0
replies
99
views
updated 1 day ago by
GenoMax
125k
•
written 1 day ago by
oksana03fel
•
0
0
votes
0
replies
101
views
0
votes
1
reply
201
views
2 days ago by
eva_u
▴
10
0
votes
4
replies
200
views
updated 1 day ago by
FrankStarling
▴
30
•
written 2 days ago by
bsp017
▴
40
3
votes
5
replies
206
views
0
votes
0
replies
78
views
0
votes
1
reply
114
views
2
votes
5
replies
211
views
1 day ago by
khoojj
•
0
0
votes
0
replies
100
views
0
votes
0
replies
107
views
2 days ago by
Sebastian Hesse
▴
320
0
votes
0
replies
94
views
2 days ago by
TN
•
0
0
votes
0
replies
112
views
2 days ago by
Sara
▴
10
0
votes
0
replies
108
views
0
votes
2
replies
187
views
2 days ago by
bioinformatics.girl
•
0
0
votes
0
replies
134
views
0
votes
1
reply
142
views
Recent Votes
Recent Locations •
All
Canada, just now
Bologna, just now
United States, 1 minute ago
Stony Brook University, NY, 2 minutes ago
University of Cape Town, 2 minutes ago
United States, 2 minutes ago
United States, 3 minutes ago
Recent Awards •
All
Popular Question to
epaminonda
▴
10
Popular Question to
Elisabeth Gasteiger
★
2.2k
Popular Question to
mathavanbioinfo
▴
70
Popular Question to
cgds
▴
10
Teacher to
shenwei356
7.8k
Recent Replies
Comment: Using Entrez Utilities to query the Nucleotide database by collection_date
by
anomalous.lexeme
•
0
That looks pretty useful. I'll give that a try as well. Thank you very kindly for the help.
Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
by
Juke34
7.5k
This script does not exist anymore in recent releases. Without any example I cannot help.
Comment: Create de novo repeat library
by
evoecogen
▴
20
Are there any alternatives to ProtExcluder? I suddenly started to have problems with v1.2:
The files blastx.out.fnolowm50seqm and blastx.o…
Comment: Find corresponding branch from gene tree in species tree
by
Charlotte West
▴
40
Following your suggestion I've been playing around with Notung and seems like its got a lot of great features. I ran:
```
java -jar notung …
Comment: how to get an average ROC curve after 10-fold cross validation in r
by
Lisa
•
0
thanks for your help
Comment: docker build Command Works Yet It Does Not Create A Docker Container
by
Indira
•
0
So - I am trying to get around proxy issues but essentially installing required packages in a docker/sif then trying to use that to run an …
Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
by
Ram
38k
Do not add answers unless you're **answering** the top level question. Use `Add Comment` or `Add Reply` instead as appropriate. I've moved …
Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
by
BioinfoBee
•
0
@juke34 I tried the agat_sp_gxf_to_gff3.pl to sort the gff3 by their chromosome order but doesn't seems to work. Any suggestions?.
Comment: CNV Prediction Tools
by
Quentin M
▴
60
Give a try to [CODEX2][1]
[1]: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1578-y
Comment: Problem with tximport and plasmodium falciparum
by
bioinfo
▴
20
Thank you. It does not seem to be that. I changed my script a bit.
Now it looks like shown below:
mart <- biomaRt::useMart("protists_…
Comment: Copy Number Variants, where to start?
by
paolo
▴
60
I have found autoCNV, inCNV, and ClassifyCNV. The second one is for exomic CNVs only, and the third one does not run on Windows, but it mig…
Comment: BLAST reference genome indexing
by
bhumm
▴
20
Thanks for the explanation and links. So when calling the database in the for use, I call the prefix of all the 'subfiles' which invokes th…
Comment: Averaging across multiple proteomic experiments
by
bhumm
▴
20
It is two biological replicates. I reasoned it as increasing N=2. For both biological replicates, it is ~13 controls vs ~13 disease conditi…
Comment: How to summarize the expression of a gene when having expression data from diffe
by
i.sudbery
16k
tximport will calculate the weighted effective transcript length, but it doesn't use that in its calculation of gene level expression. Both…
Traffic: 2490 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6