updated 9 days ago by
Ram
43k
•
written 6.8 years ago by
lessismore
★
1.3k
13
votes
22
replies
11k
views
11
votes
22
replies
4.2k
views
8
votes
10
replies
699
views
6
votes
10
replies
1.7k
views
5
votes
6
replies
395
views
7 follow
updated 24 days ago by
Istvan Albert
100k
•
written 25 days ago by
Pumla
•
0
5
votes
2
replies
1.7k
views
5
votes
7
replies
2.7k
views
5
votes
8
replies
3.7k
views
5
votes
5
replies
7.2k
views
updated 15 days ago by
veldahan86
•
0
•
written 3.8 years ago by
Assa Yeroslaviz
★
1.8k
4
votes
2
replies
229
views
4
votes
6
replies
836
views
4
votes
7
replies
560
views
4
votes
13
replies
866
views
updated 9 days ago by
BioinfGuru
★
1.7k
•
written 15 days ago by
matteo.levorato
•
0
4
votes
7
replies
2.4k
views
4
votes
9
replies
572
views
updated 23 days ago by
Ram
43k
•
written 24 days ago by
dalibenam64
•
0
4
votes
7
replies
550
views
4
votes
4
replies
360
views
24 days ago by
newuser2024
•
0
3
votes
4
replies
3.5k
views
3
votes
6
replies
2.4k
views
3
votes
5
replies
409
views
updated 23 days ago by
GenoMax
141k
•
written 24 days ago by
e.r.zakiev
▴
200
3
votes
2
replies
1.2k
views
updated 8 days ago by
Ram
43k
•
written 4.4 years ago by
baldissera152
▴
10
3
votes
2
replies
241
views
29 days ago by
DYLAN NICO
•
0
3
votes
6
replies
4.1k
views
3
votes
3
replies
470
views
3
votes
2
replies
301
views
3
votes
1
reply
264
views
3
votes
4
replies
353
views
23 days ago by
Estevão
•
0
3
votes
3
replies
316
views
27 days ago by
Pumla
•
0
3
votes
12
replies
492
views
2
votes
4
replies
395
views
updated 16 days ago by
GenoMax
141k
•
written 17 days ago by
pl.terzian
•
0
2
votes
4
replies
1.4k
views
2
votes
3
replies
254
views
2
votes
5
replies
669
views
2
votes
3
replies
1.1k
views
2
votes
6
replies
400
views
17 days ago by
jkim
▴
170
2
votes
2
replies
1.6k
views
2
votes
10
replies
3.4k
views
2
votes
3
replies
928
views
updated 11 days ago by
Ram
43k
•
written 4.1 years ago by
svlachavas
▴
790
2
votes
2
replies
630
views
2
votes
4
replies
2.6k
views
updated 17 days ago by
Ram
43k
•
written 8.1 years ago by
Chris Gene
▴
80
2
votes
0
replies
1.8k
views
updated 9 days ago by
Ram
43k
•
written 3.5 years ago by
chatterjee.arumoy
▴
50
2
votes
18
replies
1.6k
views
2
votes
9
replies
821
views
2
votes
1
reply
953
views
2
votes
1
reply
246
views
2
votes
3
replies
1.5k
views
2
votes
6
replies
861
views
2
votes
5
replies
451
views
2
votes
4
replies
316
views
9 days ago by
kirill.zaslavsky
•
0
2
votes
0
replies
206
views
Recent Votes
Recent Locations •
All
United States, just now
Germany, 1 minute ago
United States, 2 minutes ago
India, 3 minutes ago
United States, 3 minutes ago
United Kingdom, 5 minutes ago
United States, 6 minutes ago
Recent Awards •
All
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Popular Question to
sil_bioinfo
▴
40
Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴
10
install.packages("pheatmap")
library(pheatmap)
setwd("/Users/data_analysis/results")
data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴
10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Traffic: 2839 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6