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Showing :
questions
0
votes
2
replies
433
views
Appropriate regression analysis for relationship of WGCNA modules with clinical traits
quantile
linear
WGCN
polynominal
eigengen
7 months ago by
seta
★ 1.9k
2
votes
12
replies
1.9k
views
mergeCutHeight in WGCNA and correlation type for correct module identification
mergeCutHeight
correlation
WGCNA
categorigal
7 months ago by
seta
★ 1.9k
0
votes
0
replies
339
views
calculating genetic risk score using HLA DQ haplotypes
HLA
PRS
DQ
haplotypes
11 months ago by
seta
★ 1.9k
3
votes
5
replies
1.4k
views
ROC analysis, is this ROC curve usual?
AUC
curve
ROC
updated 22 months ago by
Kevin Blighe
89k • written 22 months ago by
seta
★ 1.9k
0
votes
0
replies
440
views
Blastn for converting the circular IDs
blastn
microarray
RNA
circular-ID
2.2 years ago by
seta
★ 1.9k
0
votes
0
replies
534
views
Converting Arraystar circular ID to circAtlas ID
circular
ID
conversion
circAtlas
Arraystar
2.2 years ago by
seta
★ 1.9k
5
votes
6
replies
2.1k
views
Filtering bad quality probes in illumina microarray data
microarray
illumina
Kevin-Blighe
GEO2R
2.3 years ago by
seta
★ 1.9k
1
vote
0
replies
486
views
Calculating F statistics for SNP for association meta analysis
meta-analysis
SNP
association
analysis
F-statistics
2.4 years ago by
seta
★ 1.9k
7
votes
5
replies
2.7k
views
what is the benefit of the de bruijn algorithm for short read assembly?
Assembly
de Bruijn algorithm
K-mer
updated 2.8 years ago by
Michael
55k • written 8.3 years ago by
seta
★ 1.9k
0
votes
5
replies
5.1k
views
Error during Trinity running with the recent version?
next-gen
Assembly
RNA-Seq
updated 2.0 years ago by
Ram
44k • written 9.8 years ago by
seta
★ 1.9k
2
votes
3
replies
1.2k
views
Batch effect in the single microarray dataset
gene-expression
batch-effect
PCA
updated 6 months ago by
Ram
44k • written 3.1 years ago by
seta
★ 1.9k
1
vote
0
replies
1.1k
views
Survival analysis of TCGA data
survival
analysis
TCGA
Regparallele
WGCNA
3.1 years ago by
seta
★ 1.9k
0
votes
1
reply
836
views
Using simple t-test for selected genes of the microarray dataset
gene
expression
microarray
t-test
3.2 years ago by
seta
★ 1.9k
0
votes
0
replies
697
views
Weird PCA plot using WGCNA results
cancer
PCA
expression
WGCNA
plot
3.4 years ago by
seta
★ 1.9k
1
vote
2
replies
2.4k
views
Module preservation analysis using WGCNA
cancer
expression
WGCNA
samples
gene
updated 3.5 years ago by
andres.firrincieli
3.8k • written 3.5 years ago by
seta
★ 1.9k
6
votes
7
replies
4.9k
views
Regarding finding hub genes using WGCNA
gene-expression
hub-genes
WGCNA
updated 3.5 years ago by
andres.firrincieli
3.8k • written 3.5 years ago by
seta
★ 1.9k
6
votes
13
replies
7.5k
views
9 follow
VCF file phasing by SHAPEIT
vcf
phasing
whole genome
shapiet
updated 3.5 years ago by
4galaxy77
2.9k • written 6.2 years ago by
seta
★ 1.9k
0
votes
5
replies
1.6k
views
Considering the multiple test correction for the analysis of polygenic risk score association
association
allele
polygenic
score
Bonferroni
updated 3.6 years ago by
German.M.Demidov
★ 2.9k • written 3.6 years ago by
seta
★ 1.9k
1
vote
1
reply
971
views
Network construction and analysis using WGCNA
meta-analysis
WGCNA
updated 3.6 years ago by
andres.firrincieli
3.8k • written 3.6 years ago by
seta
★ 1.9k
2
votes
5
replies
2.4k
views
Visualizing the gene network obtained by WGCNA
WGCNA
weighted
network
visualizing
3.6 years ago by
seta
★ 1.9k
0
votes
2
replies
845
views
Comparing two highly similar genomes
genome
alignment
updated 20 months ago by
Ram
44k • written 3.7 years ago by
seta
★ 1.9k
0
votes
2
replies
988
views
Any text mining tool?
text-mining
meta-analysis
3.7 years ago by
seta
★ 1.9k
0
votes
1
reply
3.1k
views
Regarding valid transcript and Transdecoder output
sequencing
Transdecoder
transcript
assembly
updated 3.9 years ago by
ponganta
▴ 590 • written 8.8 years ago by
seta
★ 1.9k
5
votes
7
replies
2.2k
views
RNA-seq power estimation using ssizeRNA program
power analysis
RNA-seq
ssizeRNA
updated 4.1 years ago by
Kevin Blighe
89k • written 4.1 years ago by
seta
★ 1.9k
14
votes
14
replies
12k
views
11 follow
How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta
gtf
stringtie
updated 7 days ago by
Juke34
9.1k • written 7.8 years ago by
seta
★ 1.9k
0
votes
0
replies
848
views
The same effect of SNPs in LD?
GWAS
linkage disequilibrium
effect size
4.2 years ago by
seta
★ 1.9k
0
votes
0
replies
1.3k
views
PLINK beta coefficient
GWAS
association
beta coefficient
PLINK
4.3 years ago by
seta
★ 1.9k
1
vote
0
replies
1.1k
views
Linear mixed model for genome-wide association analysis
linear mixed model
GWAS
GCTA
updated 4.3 years ago by
Biostar
20 • written 4.4 years ago by
seta
★ 1.9k
0
votes
2
replies
1.8k
views
GWAS results and linkage disequilibrium issue
GWAS
linkage disequilibrium
LD
risk score
4.4 years ago by
seta
★ 1.9k
2
votes
2
replies
1.5k
views
edgeR normalization via TMM method
RNA-Seq
edgeR normalization
TMM
updated 4.4 years ago by
ATpoint
87k • written 4.4 years ago by
seta
★ 1.9k
5
votes
23
replies
3.1k
views
Please help with connecting the part of the header in a fasta file with another text file
programming
fasta
updated 23 months ago by
Ram
44k • written 8.6 years ago by
seta
★ 1.9k
27
votes
44
replies
17k
views
How to remove contamination from the transcriptome assembly
RNA-Seq
contamination
assembly
blast
Hiseq reads
updated 2.5 years ago by
Ram
44k • written 9.3 years ago by
seta
★ 1.9k
0
votes
5
replies
2.1k
views
Please help about java error of BBDuk
bbmap
bbduk
java
brian bushnel
updated 3.9 years ago by
GenoMax
149k • written 4.5 years ago by
seta
★ 1.9k
0
votes
5
replies
2.4k
views
Strange, FastQC doesn't work on windows, any suggestions?
Fastqc
NGS
4.5 years ago by
seta
★ 1.9k
0
votes
6
replies
1.9k
views
Microarray data normalization
RMA
microarray
normalization
updated 3.5 years ago by
parinv
▴ 80 • written 4.5 years ago by
seta
★ 1.9k
0
votes
2
replies
998
views
Linear mixed model and GWAS analysis
gwas
linear mixed model
longitudinal
cohort
4.6 years ago by
seta
★ 1.9k
0
votes
0
replies
672
views
Physical interaction of long non-coding RNAs with target genes
target genes
physical interaction
lncRNA
4.6 years ago by
seta
★ 1.9k
0
votes
2
replies
922
views
Validation of protein-coding gene and lncRNA correlation
RNA-Seq
correlation
non-coding RNA
lncRNA
updated 4.7 years ago by
caggtaagtat
★ 1.9k • written 4.7 years ago by
seta
★ 1.9k
0
votes
0
replies
642
views
The gene expression effect of eQTL variants in high LD
eQTL variants
GTEx database
gene expression effect
updated 4.7 years ago by
Biostar
20 • written 4.9 years ago by
seta
★ 1.9k
4
votes
5
replies
8.2k
views
Read trimming with BBDuk
bbduk
read trimming
bbmap
updated 4.8 years ago by
Biostar
20 • written 7.8 years ago by
seta
★ 1.9k
2
votes
2
replies
851
views
Classification of long non-coding RNAs
lncRNA
non-coding RNA
updated 4.8 years ago by
GenoMax
149k • written 4.8 years ago by
seta
★ 1.9k
0
votes
2
replies
1.4k
views
long-non coding RNA and protein-coding genes correlation
lncRNA
RNA-seq
correlation
co-expression
updated 4.8 years ago by
Carlo Yague
8.9k • written 4.8 years ago by
seta
★ 1.9k
5
votes
7
replies
1.6k
views
lncRNA differential expression analysis
RNA-seq
differential expression
lncRNA
updated 2.4 years ago by
Kevin Blighe
89k • written 4.8 years ago by
seta
★ 1.9k
0
votes
3
replies
1.4k
views
DE lncRNA and mRNA correlation analysis
lncRNA
correlation analysi
mRNA
4.8 years ago by
seta
★ 1.9k
3
votes
8
replies
1.6k
views
microRNA-seq analysis from RNA-seq data
rna-seq
small rna
microrna
long non-coding rna
updated 4.9 years ago by
rob.costa1234
▴ 310 • written 4.9 years ago by
seta
★ 1.9k
0
votes
0
replies
753
views
Haplotype determination from a list of variants
haplotype
SNP variant
4.9 years ago by
seta
★ 1.9k
2
votes
3
replies
3.6k
views
Refseq proteins for several taxids
next-gen
blast
RNA-Seq
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
seta
★ 1.9k
5
votes
6
replies
6.1k
views
exact command for read normalization using trinity software
Assembly
RNA-Seq
updated 3.0 years ago by
Ram
44k • written 10.2 years ago by
seta
★ 1.9k
1
vote
1
reply
1.6k
views
Shortest path algorithm in pathway studio
pathway
shortest path
algorithm
updated 5.0 years ago by
Biostar
20 • written 7.5 years ago by
seta
★ 1.9k
0
votes
1
reply
1.5k
views
GCTA tool for case-control association analysis
GCTA
case-control
updated 5.0 years ago by
Lemire
▴ 940 • written 5.0 years ago by
seta
★ 1.9k
294 results • Page
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