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13
votes
9
replies
2.1k
views
How I do a loop over multiple files in terminal?
Linux
updated 4.5 years ago by 47k • written 4.5 years ago by ★ 4.3k
3
votes
4
replies
801
views
Summing up prob level
r microarray gene
4.6 years ago by zizigolu ★ 4.3k
4
votes
2
replies
4.1k
views
Getting a list of protein coding genes in human
RNA-Seq R gene
4.7 years ago by zizigolu ★ 4.3k
5
votes
7
replies
1.2k
views
Dealing with two batches in RNA-seq
RNA-Seq
updated 4.7 years ago by 88k • written 4.7 years ago by ★ 4.3k
2
votes
6
replies
1.4k
views
How I deal with raw read counts of RNA-seq
RNA-Seq DESeq2 STAR
updated 4.7 years ago by 14k • written 4.7 years ago by ★ 4.3k
7
votes
9
replies
2.9k
views
Converting and sorting .sam at the same time
RNA-Seq R next-gen
updated 4.7 years ago by 47k • written 4.7 years ago by ★ 4.3k
7
votes
13
replies
2.6k
views
Why I have too many reads non uniquely aligned?
RNA-Seq alignment
updated 4.7 years ago by ▴ 220 • written 4.7 years ago by ★ 4.3k
12
votes
9
replies
5.1k
views
How I know a file is sam or bam, sorted or unsorted
RNA-Seq alignment
updated 4.7 years ago by 3.2k • written 4.7 years ago by ★ 4.3k
16
votes
12
replies
1.6k
views
If I am in a right way in RNA-seq
RNA-Seq alignment
updated 4.7 years ago by 8.2k • written 4.7 years ago by ★ 4.3k
19
votes
13
replies
6.0k
views
6 follow
How I deal with different lanes in RNA-seq alignment
RNA-Seq STAR alignment
updated 4.7 years ago by ▴ 190 • written 4.7 years ago by ★ 4.3k
0
votes
4
replies
2.3k
views
How I download data from the European Genome-phenome Archive (EGA)
RNA-Seq
4.8 years ago by zizigolu ★ 4.3k
0
votes
3
replies
1.4k
views
Empty output of allele specific expression analysis by GATK
GATK ASE RNA-Seq WGS
updated 4.8 years ago by 43k • written 4.8 years ago by ★ 4.3k
2
votes
0
replies
1.4k
views
Best way to combine single cell RNA-seq and proteomics
Single cell RNA-seq Proteomics R
updated 4.9 years ago by 20 • written 5.0 years ago by ★ 4.3k
2
votes
6
replies
1.1k
views
Getting a list of up and down regulated genes in a pathway
gene pathway
updated 4.9 years ago by ▴ 170 • written 4.9 years ago by ★ 4.3k
4
votes
10
replies
2.6k
views
extracting a matrix of genes from another bigger matrix
gene R
updated 2.7 years ago by 43k • written 8.4 years ago by ★ 4.3k
12
votes
7
replies
10k
views
what is the input for cuffmerge???
cufflinks cuffmerge
updated 2.7 years ago by 43k • written 8.7 years ago by ★ 4.3k
3
votes
12
replies
14k
views
Downloading SRA data using the SRA Toolkit
RNA-Seq rna-seq sequencing
updated 4.9 years ago by • 0 • written 9.0 years ago by ★ 4.3k
6
votes
9
replies
1.8k
views
Getting this specific information from gene- annotation enrichment analysis
DAVID R PANTHER annotation
updated 5.0 years ago by ▴ 20 • written 5.0 years ago by ★ 4.3k
3
votes
3
replies
3.4k
views
Plotting heatmap by binary values
r heatmap
5.0 years ago by zizigolu ★ 4.3k
4
votes
11
replies
2.0k
views
How I reproduce such a plot
Pathway r single cell RNA-seq Protomics
updated 5.0 years ago by ★ 2.2k • written 5.0 years ago by ★ 4.3k
1
vote
4
replies
1.7k
views
Running time in different callers
mutect varscan SNV WGS
5.1 years ago by zizigolu ★ 4.3k
5
votes
5
replies
2.6k
views
Creating a PON in GATK
GATK wgs mutect2
5.1 years ago by zizigolu ★ 4.3k
6
votes
8
replies
6.1k
views
Problem with vcf2maf
maf vcf wgs path
updated 5.1 years ago by 43k • written 5.1 years ago by ★ 4.3k
1
vote
3
replies
3.3k
views
Problem with .vcf annovar
vcf annovar maf
updated 5.1 years ago by ▴ 20 • written 5.1 years ago by ★ 4.3k
8
votes
9
replies
4.1k
views
Ensembl gene annotation GRCh37.87
RNA-Seq ensembl salmon
updated 5.1 years ago by 142k • written 5.1 years ago by ★ 4.3k
22
votes
16
replies
5.3k
views
mireap procedure short tutorial
miRNA mireap
updated 5.1 years ago by ★ 1.3k • written 7.7 years ago by ★ 4.3k
8
votes
20
replies
2.7k
views
Getting read depth for normal and tumour
R WGS vcf
5.1 years ago by zizigolu ★ 4.3k
1
vote
1
reply
1.5k
views
Extracting information from gatk VariantFiltration output
gatk WGS
5.1 years ago by zizigolu ★ 4.3k
2
votes
3
replies
1.2k
views
Visualizing called somatic copy number variation
WGS CNV
5.1 years ago by zizigolu ★ 4.3k
4
votes
6
replies
1.2k
views
Non zero existing of scatngs
WGS software error scatngs
5.1 years ago by zizigolu ★ 4.3k
13
votes
23
replies
1.9k
views
How I deal with this big data
WGS transfer
updated 5.2 years ago by 82k • written 5.2 years ago by ★ 4.3k
5
votes
7
replies
2.0k
views
Converting this matrix to gene name or symbole
Ensembl ID HTSeq RNA-Seq
5.2 years ago by zizigolu ★ 4.3k
1
vote
3
replies
1.2k
views
Downloading public RNA-seq raw read counts
RNA-Seq TCGA firehose NIH
5.2 years ago by zizigolu ★ 4.3k
5
votes
12
replies
2.5k
views
Installation error CNVkit: could not find the executable 'Rscript'
CNVkit
5.2 years ago by zizigolu ★ 4.3k
1
vote
3
replies
1.5k
views
Splitting .vcf file
WGS vcftools
5.2 years ago by zizigolu ★ 4.3k
0
votes
9
replies
1.8k
views
Removing or not removing the duplicates in .bam file
picard GATK RNA-Seq WGS
5.2 years ago by zizigolu ★ 4.3k
17
votes
28
replies
4.1k
views
collapsing transcript expression to gene-level expression
FeatureCounts BAM RNA-Seq
5.2 years ago by zizigolu ★ 4.3k
4
votes
13
replies
2.4k
views
Variant calling from RNA-seq?
WGS RNA-Seq
5.2 years ago by zizigolu ★ 4.3k
1
vote
5
replies
1.9k
views
significant differential expressed genes from two microarray accession
gene
updated 5.2 years ago by ▴ 50 • written 7.9 years ago by ★ 4.3k
3
votes
5
replies
1.5k
views
Should I remove duplicates?
BAM Duplicates next-gen
updated 5.2 years ago by 82k • written 5.2 years ago by ★ 4.3k
13
votes
20
replies
2.5k
views
Getting these files from different parts of genome
BED WGS genome SNP R
5.2 years ago by zizigolu ★ 4.3k
19
votes
23
replies
2.5k
views
Removing duplicated mutations from a txt
WGS VCF mutation dndscv
updated 5.2 years ago by 11k • written 5.2 years ago by ★ 4.3k
1
vote
16
replies
2.7k
views
Merging fastq files from two experiments
FASTQ NGS
updated 5.2 years ago by 20 • written 5.3 years ago by ★ 4.3k
7
votes
10
replies
1.9k
views
6 follow
extracting multiple columns from a file
Excel
written 7.1 years ago by ★ 4.3k
16
votes
24
replies
4.5k
views
dNdScv error: Zero coding substitutions found in this dataset
dndscv R WGS
updated 5.3 years ago by ▴ 220 • written 5.3 years ago by ★ 4.3k
15
votes
13
replies
3.4k
views
Extracting this data frame from a .vcf file
WGS R VCF
5.3 years ago by zizigolu ★ 4.3k
8
votes
10
replies
2.3k
views
Reproducing this picture
genome snp R sequencing
updated 5.3 years ago by 22k • written 5.3 years ago by ★ 4.3k
0
votes
9
replies
1.0k
views
Starting with whole genome sequencing data
WGS sequencing
5.3 years ago by zizigolu ★ 4.3k
23
votes
11
replies
11k
views
Set point colour based on threshold in scatter plot
R plot
updated 5.3 years ago by 21k • written 5.3 years ago by ★ 4.3k
0
votes
1
reply
1.4k
views
Finding UP and DOWN regulated genes in a pathway incline to which group
R Pathway Enrichment analysis
5.3 years ago by zizigolu ★ 4.3k
433 results • Page 3 of 9
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