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1
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539
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The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers TRINITY
6 days ago by mathavanbioinfo ▴ 90
0
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1
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283
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What alternative method would recommend for conducting gene ontology analysis?
WEGO gene-ontology
updated 4 weeks ago by ★ 1.9k • written 4 weeks ago by ▴ 90
1
vote
3
replies
799
views
Can shotgun metagenome approaches effectively target both RNA and DNA viruses in low-viral-load water samples?
RNA-virus binning metagenome abundance shotgun
updated 4 weeks ago by ▴ 510 • written 5 weeks ago by ▴ 90
0
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0
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799
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Comment: Comment: Can shotgun metagenome approaches effectively target both RNA and DNA viruses in
4 weeks ago by mathavanbioinfo ▴ 90
4
votes
1
reply
274
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why there is an asterisk symbol at the end of each proteins sequences of fasta files in the Braker3 output?
gtf breaker3 protein-seq
5 weeks ago by mathavanbioinfo ▴ 90
4
votes
4
replies
356
views
Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
illumina RNA-seq paired-end
updated 6 weeks ago by 19k • written 6 weeks ago by ▴ 90
0
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0
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196
views
Gene Prediction Breaker3
prediction protein-seq GTF Breaker3 gene
6 weeks ago by mathavanbioinfo ▴ 90
1
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1
reply
788
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What is the data requirement for shotgun metagenome analysis of soil samples from plastic land-filling, coal mining, and petroleum oil refineries fie…
shotgun-metagenome species-level binning gtdbk data-requirement
updated 12 weeks ago by 141k • written 12 weeks ago by ▴ 90
0
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1
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596
views
Comment: Comment: how to download BF ,CC and MF
3 months ago by mathavanbioinfo ▴ 90
0
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0
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554
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Comment: Comment: How to visualize multiple bacterial genomes with circos?
3 months ago by mathavanbioinfo ▴ 90
1
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1
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242
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Genome Analysis Insights: BUSCO Evaluation of Repetitive Elements and Ploidy Level in Crocus sativus"
coverage ploidy complex-genome BUSCO
updated 3 months ago by 43k • written 3 months ago by ▴ 90
2
votes
3
replies
1.2k
views
How to identify the 300 kb upstream and downstream genes of lncRNAs?
RNA-Seq lncRNA target genes upstream downstream
updated 5 months ago by • 0 • written 3.4 years ago by ▴ 90
0
votes
1
reply
521
views
How to remove cloning vector sequence from bacterial assembled genome?
assembly removal bacterial genome vector
updated 10 months ago by 141k • written 10 months ago by ▴ 90
3
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2
replies
893
views
How interpret question mark symbol strand column in GFF file?
GFF transcriptome
updated 17 months ago by 14k • written 17 months ago by ▴ 90
2
votes
1
reply
446
views
How to run phylogeny for genome assembly file?
phylogenetic tree Phylogeny assembly genome
updated 19 months ago by ★ 27k • written 19 months ago by ▴ 90
1
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2
replies
544
views
How to download all fungal virulence proteins from UniProt?
protein blast fungi uniprot
updated 13 months ago by 43k • written 20 months ago by ▴ 90
1
vote
1
reply
510
views
Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
DEG lncRNA
updated 21 months ago by ★ 1.9k • written 21 months ago by ▴ 90
0
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0
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325
views
How to merge the pair end sample for GBS analysis in TASSEL software?
GBS plot GAPPIT
updated 2.0 years ago by 8.7k • written 2.0 years ago by ▴ 90
1
vote
1
reply
749
views
Subread FeatureCounts produces zero percent successfull alignment
zero subread featrureCounts alignment
updated 2.3 years ago by 8.7k • written 2.3 years ago by ▴ 90
0
votes
1
reply
942
views
Unable to download kraken2 database
databaase kraken2 metagenome
updated 2.3 years ago by 141k • written 2.3 years ago by ▴ 90
0
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0
replies
474
views
How to remove the isoform in the trasncript.fa file from salmon output?
transcript salmon denovo assembly
updated 2.4 years ago by 82k • written 2.4 years ago by ▴ 90
0
votes
1
reply
1.2k
views
How to calculate phred score of fastq files?
linux phred fastq
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 90
0
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2
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865
views
How to download all the genome fasta file for plants?
standalone blast
updated 2.6 years ago by ★ 3.7k • written 2.6 years ago by ▴ 90
0
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0
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2.3k
views
Comment: Comment: How to check if a Fastq file is contaminated with other strains?
2.7 years ago by mathavanbioinfo ▴ 90
0
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0
replies
423
views
How to add enzyme details in Tassel pipeline?
GBS Tassel GBSEnzyme.java
updated 2.7 years ago by 5.8k • written 2.8 years ago by ▴ 90
4
votes
7
replies
3.0k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 13 months ago by 43k • written 2.8 years ago by ▴ 90
1
vote
1
reply
1.3k
views
what is the meaning of --dta paremeter used in the Hisat2 alignment?
Hisat2
updated 2.8 years ago by 43k • written 2.8 years ago by ▴ 90
0
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1
reply
808
views
Comment: Comment: extract the ids and key values
2.8 years ago by mathavanbioinfo ▴ 90
0
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4
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808
views
extract the ids and key values
extract grep
updated 2.8 years ago by 8.5k • written 2.8 years ago by ▴ 90
0
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0
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1.8k
views
Comment: Comment: How to generate GTF file from BLAST output?
2.9 years ago by mathavanbioinfo ▴ 90
6
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6
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1.8k
views
How to generate GTF file from BLAST output?
GTF
2.9 years ago by mathavanbioinfo ▴ 90
0
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0
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1.8k
views
Comment: Comment: How to generate GTF file from BLAST output?
2.9 years ago by mathavanbioinfo ▴ 90
0
votes
1
reply
691
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 2.9 years ago by 141k • written 2.9 years ago by ▴ 90
3
votes
4
replies
1.3k
views
Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antisense regions of the genome?
GTF featureCounts NGS GFF
updated 2.9 years ago by 19k • written 2.9 years ago by ▴ 90
0
votes
1
reply
679
views
How to view large PPI network in STRING database?
PPI large network STRING
updated 2.9 years ago by 27k • written 2.9 years ago by ▴ 90
0
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1
reply
1.3k
views
Comment: Comment: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
2.9 years ago by mathavanbioinfo ▴ 90
0
votes
3
replies
1.1k
views
How can I get three letter organism code for cavia porcellus?
GO three KEGG
updated 3.0 years ago by 7.5k • written 3.0 years ago by ▴ 90
0
votes
1
reply
900
views
Comment: Comment: Where I can get the gtf file of antheraea mylitta
3.0 years ago by mathavanbioinfo ▴ 90
5
votes
3
replies
900
views
Where I can get the gtf file of antheraea mylitta
GTF
updated 3.0 years ago by 15k • written 3.0 years ago by ▴ 90
0
votes
0
replies
546
views
Extracting the genes associated drugs?
bank Drug
3.0 years ago by mathavanbioinfo ▴ 90
4
votes
5
replies
2.3k
views
How to download entire human protein sequences from RefSeq database hrough command line?
Refseq programming
updated 3.1 years ago by ★ 3.7k • written 3.1 years ago by ▴ 90
2
votes
2
replies
702
views
How to handle "perbase quality failed" issue?
RNA-Seq fastqc
3.4 years ago by mathavanbioinfo ▴ 90
4
votes
6
replies
3.0k
views
How to perform the lncRNA enrichment analysis?
lncRNA enrichment gene ontology
updated 3.4 years ago by ▴ 180 • written 3.5 years ago by ▴ 90
2
votes
1
reply
996
views
How to extract upstream and downstream of lncRNA in particular range?
RNA-Seq lncRNA hommer bed gtf
updated 3.4 years ago by ▴ 480 • written 3.4 years ago by ▴ 90
0
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1
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3.0k
views
Comment: A: How to perform the lncRNA enrichment analysis?
3.5 years ago by mathavanbioinfo ▴ 90
1
vote
1
reply
661
views
How to find the gene name and classification using Ensembl ID?
genome ensembl lncRNA
updated 3.5 years ago by 27k • written 3.5 years ago by ▴ 90
0
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0
replies
1.2k
views
Comment: C: How create annotation file for WGCNA for RNA-Seq data?
3.8 years ago by mathavanbioinfo ▴ 90
1
vote
2
replies
1.2k
views
How create annotation file for WGCNA for RNA-Seq data?
RNA-Seq WGCNA Annotaion file
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 90
0
votes
1
reply
1.0k
views
How to make annotation file for WGCNA analysis of RNA Seq data?
next-gen
updated 4.0 years ago by 87k • written 4.0 years ago by ▴ 90
0
votes
2
replies
978
views
DEGS analysis with DESeq2?
DESeq2 DEGs
updated 4.1 years ago by 20 • written 4.2 years ago by ▴ 90
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