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How to remove cloning vector sequence from bacterial assembled genome?
assembly removal bacterial genome vector
updated 3 months ago by 134k • written 3 months ago by ▴ 70
3
votes
2
replies
645
views
How interpret question mark symbol strand column in GFF file?
GFF transcriptome
updated 9 months ago by 14k • written 9 months ago by ▴ 70
2
votes
1
reply
327
views
How to run phylogeny for genome assembly file?
phylogenetic tree Phylogeny assembly genome
updated 12 months ago by ★ 24k • written 12 months ago by ▴ 70
1
vote
2
replies
376
views
How to download all fungal virulence proteins from UniProt?
protein blast fungi uniprot
updated 6 months ago by 40k • written 13 months ago by ▴ 70
1
vote
1
reply
352
views
Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
DEG lncRNA
updated 14 months ago by ★ 1.8k • written 14 months ago by ▴ 70
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0
replies
238
views
How to merge the pair end sample for GBS analysis in TASSEL software?
GBS plot GAPPIT
updated 17 months ago by 8.4k • written 17 months ago by ▴ 70
1
vote
1
reply
594
views
Subread FeatureCounts produces zero percent successfull alignment
zero subread featrureCounts alignment
updated 20 months ago by 8.4k • written 20 months ago by ▴ 70
0
votes
1
reply
713
views
Unable to download kraken2 database
databaase kraken2 metagenome
updated 21 months ago by 134k • written 21 months ago by ▴ 70
0
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0
replies
354
views
How to remove the isoform in the trasncript.fa file from salmon output?
transcript salmon denovo assembly
updated 21 months ago by 76k • written 21 months ago by ▴ 70
0
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1
reply
849
views
How to calculate phred score of fastq files?
linux phred fastq
updated 2.0 years ago by 134k • written 2.0 years ago by ▴ 70
0
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2
replies
717
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How to download all the genome fasta file for plants?
standalone blast
updated 2.0 years ago by ★ 3.6k • written 2.0 years ago by ▴ 70
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0
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1.8k
views
Comment: Comment: How to check if a Fastq file is contaminated with other strains?
2.1 years ago by mathavanbioinfo ▴ 70
0
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0
replies
338
views
How to add enzyme details in Tassel pipeline?
GBS Tassel GBSEnzyme.java
updated 2.1 years ago by 5.8k • written 2.2 years ago by ▴ 70
4
votes
7
replies
2.5k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 6 months ago by 40k • written 2.2 years ago by ▴ 70
1
vote
1
reply
991
views
what is the meaning of --dta paremeter used in the Hisat2 alignment?
Hisat2
updated 2.2 years ago by 40k • written 2.2 years ago by ▴ 70
0
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1
reply
640
views
Comment: Comment: extract the ids and key values
2.2 years ago by mathavanbioinfo ▴ 70
0
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4
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640
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extract the ids and key values
extract grep
updated 2.2 years ago by 8.2k • written 2.2 years ago by ▴ 70
0
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0
replies
1.4k
views
Comment: Comment: How to generate GTF file from BLAST output?
2.3 years ago by mathavanbioinfo ▴ 70
6
votes
6
replies
1.4k
views
How to generate GTF file from BLAST output?
GTF
2.3 years ago by mathavanbioinfo ▴ 70
0
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0
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1.4k
views
Comment: Comment: How to generate GTF file from BLAST output?
2.3 years ago by mathavanbioinfo ▴ 70
0
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1
reply
565
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 2.3 years ago by 134k • written 2.3 years ago by ▴ 70
3
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4
replies
1.0k
views
Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antisense regions of the genome?
GTF featureCounts NGS GFF
updated 2.3 years ago by 17k • written 2.3 years ago by ▴ 70
0
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1
reply
534
views
How to view large PPI network in STRING database?
PPI large network STRING
updated 2.3 years ago by 26k • written 2.3 years ago by ▴ 70
0
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1
reply
1.0k
views
Comment: Comment: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
2.3 years ago by mathavanbioinfo ▴ 70
0
votes
3
replies
863
views
How can I get three letter organism code for cavia porcellus?
GO three KEGG
updated 2.4 years ago by 7.5k • written 2.4 years ago by ▴ 70
0
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1
reply
750
views
Comment: Comment: Where I can get the gtf file of antheraea mylitta
2.4 years ago by mathavanbioinfo ▴ 70
5
votes
3
replies
750
views
Where I can get the gtf file of antheraea mylitta
GTF
updated 2.4 years ago by 14k • written 2.4 years ago by ▴ 70
0
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0
replies
460
views
Extracting the genes associated drugs?
bank Drug
2.4 years ago by mathavanbioinfo ▴ 70
4
votes
5
replies
1.9k
views
How to download entire human protein sequences from RefSeq database hrough command line?
Refseq programming
updated 2.5 years ago by ★ 3.6k • written 2.5 years ago by ▴ 70
2
votes
2
replies
592
views
How to handle "perbase quality failed" issue?
RNA-Seq fastqc
2.8 years ago by mathavanbioinfo ▴ 70
4
votes
6
replies
2.5k
views
How to perform the lncRNA enrichment analysis?
lncRNA enrichment gene ontology
updated 2.8 years ago by ▴ 160 • written 2.9 years ago by ▴ 70
2
votes
2
replies
768
views
How to identify the 300 kb upstream and downstream genes of lncRNAs?
RNA-Seq lncRNA target genes upstream downstream
updated 2.8 years ago by 13k • written 2.8 years ago by ▴ 70
2
votes
1
reply
851
views
How to extract upstream and downstream of lncRNA in particular range?
RNA-Seq lncRNA hommer bed gtf
updated 2.8 years ago by ▴ 450 • written 2.8 years ago by ▴ 70
0
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1
reply
2.5k
views
Comment: A: How to perform the lncRNA enrichment analysis?
2.9 years ago by mathavanbioinfo ▴ 70
1
vote
1
reply
569
views
How to find the gene name and classification using Ensembl ID?
genome ensembl lncRNA
updated 2.9 years ago by 26k • written 2.9 years ago by ▴ 70
0
votes
0
replies
997
views
Comment: C: How create annotation file for WGCNA for RNA-Seq data?
3.2 years ago by mathavanbioinfo ▴ 70
1
vote
2
replies
997
views
How create annotation file for WGCNA for RNA-Seq data?
RNA-Seq WGCNA Annotaion file
updated 3.2 years ago by 86k • written 3.2 years ago by ▴ 70
0
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1
reply
907
views
How to make annotation file for WGCNA analysis of RNA Seq data?
next-gen
updated 3.5 years ago by 86k • written 3.5 years ago by ▴ 70
0
votes
2
replies
856
views
DEGS analysis with DESeq2?
DESeq2 DEGs
updated 3.5 years ago by 20 • written 3.6 years ago by ▴ 70
0
votes
0
replies
777
views
lncRNA prediction using CPAT?
CPAT lncRNA
3.5 years ago by mathavanbioinfo ▴ 70
0
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0
replies
1.2k
views
Comment: C: CPAT error while analysis
3.5 years ago by mathavanbioinfo ▴ 70
0
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1
reply
697
views
DEGs analysis with StringTie results?
StringTie DEGs DESeq2
3.6 years ago by mathavanbioinfo ▴ 70
0
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0
replies
2.2k
views
Comment: A: construction of draft genome from the contigs
3.7 years ago by mathavanbioinfo ▴ 70
0
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1
reply
2.0k
views
Comment: C: How to get GTF file for Rousettus_aegyptiacus?
3.7 years ago by mathavanbioinfo ▴ 70
1
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1
reply
2.0k
views
Comment: A: How to get GTF file for Rousettus_aegyptiacus?
3.7 years ago by mathavanbioinfo ▴ 70
2
votes
8
replies
2.0k
views
How to get GTF file for Rousettus_aegyptiacus?
StringTie GTF Assembly Rousettus aegyptiacus
3.7 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
811
views
How to construct draft genome of virus using Trinity de novo assembler?
RNA virus amplicons trintiy
3.7 years ago by mathavanbioinfo ▴ 70
0
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1
reply
2.0k
views
Comment: C: How to get GTF file for Rousettus_aegyptiacus?
3.7 years ago by mathavanbioinfo ▴ 70
0
votes
4
replies
1.7k
views
How to extract 3', 5' UTR sequences from genbank records using python, PERL and R code?
UTR
updated 3.7 years ago by ▴ 120 • written 3.7 years ago by ▴ 70
0
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0
replies
625
views
Comment: C: Is virus specific UTR prediction tool available?
3.8 years ago by mathavanbioinfo ▴ 70
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