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1
vote
3
replies
376
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 6 months ago by 152k • written 6 months ago by ▴ 220
0
votes
0
replies
178
views
no read counts per allele while using gatk ASEReadCounter
GATK
8 months ago by Sara ▴ 220
2
votes
4
replies
464
views
Unable to access error while running docker container for GATK
gatk docker
8 months ago by Sara ▴ 220
0
votes
3
replies
449
views
Getting fastq files as the output of bowtie2
bowtie2
updated 8 months ago by 21k • written 8 months ago by ▴ 220
3
votes
6
replies
700
views
downloading human rRNA.fasta
rRNA
updated 8 months ago by 68k • written 8 months ago by ▴ 220
0
votes
0
replies
191
views
make sashimi plot on the IGV using cram file
sashimi plot
8 months ago by Sara ▴ 220
4
votes
3
replies
820
views
determine sex ratio from the bam file
bam
updated 9 months ago by ▴ 30 • written 9 months ago by ▴ 220
3
votes
2
replies
280
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 9 months ago by 68k • written 9 months ago by ▴ 220
0
votes
2
replies
253
views
download sequencing data from public domain
fastq
updated 9 months ago by ▴ 220 • written 9 months ago by ▴ 220
1
vote
12
replies
628
views
weird alignment results for RNAseq data
hisat2 star
updated 9 months ago by 21k • written 9 months ago by ▴ 220
2
votes
2
replies
383
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 9 months ago by 21k • written 9 months ago by ▴ 220
2
votes
2
replies
332
views
monoallelic expression analysis
expression monoallelic analysis
updated 9 months ago by ★ 2.9k • written 9 months ago by ▴ 220
1
vote
1
reply
213
views
filtering out 0/0 calls from VCF file
VCF
updated 10 months ago by 152k • written 10 months ago by ▴ 220
4
votes
4
replies
350
views
VCF file comparison and plotting them
vcf
updated 10 months ago by 152k • written 10 months ago by ▴ 220
0
votes
2
replies
1.0k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 12 months ago by 13k • written 12 months ago by ▴ 220
1
vote
1
reply
404
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 13 months ago by ▴ 780 • written 13 months ago by ▴ 220
3
votes
3
replies
606
views
novel AS events detection from RNA seq
Splicing Alternative
updated 12 months ago by ▴ 10 • written 13 months ago by ▴ 220
3
votes
4
replies
539
views
correct fastq files for the expression analysis
cram
updated 13 months ago by 21k • written 13 months ago by ▴ 220
0
votes
6
replies
771
views
Problem when generating hg38 genome indexes using STAR
STAR
updated 13 months ago by 68k • written 13 months ago by ▴ 220
3
votes
8
replies
998
views
error when indexing transcroptome using salmon
Transcriptome salmon
updated 13 months ago by 5.8k • written 13 months ago by ▴ 220
0
votes
0
replies
215
views
detect the alternative contigs from the RNAseq data
alternative contigs
14 months ago by Sara ▴ 220
0
votes
4
replies
681
views
obtaining unique identifier for a sample from fastq files
fastq
15 months ago by Sara ▴ 220
1
vote
1
reply
383
views
extract specific information from fastq and sam files
sequencing
updated 16 months ago by 125k • written 16 months ago by ▴ 220
4
votes
2
replies
615
views
DNA to peptide translation and adding to csv file
translation
updated 16 months ago by 152k • written 16 months ago by ▴ 220
3
votes
3
replies
431
views
best tool for the pipeline wrapper
pipeline
updated 17 months ago by 96k • written 17 months ago by ▴ 220
2
votes
5
replies
1.1k
views
collapsing pacbio reads into a single sequence
pacbio
18 months ago by Sara ▴ 220
2
votes
2
replies
727
views
Available annotation file for the PacBio Iso-seq data
sequencing
updated 19 months ago by 125k • written 3.1 years ago by ▴ 220
3
votes
3
replies
702
views
quick way of contamination identification from fastq file
alignment
updated 20 months ago by ★ 1.2k • written 20 months ago by ▴ 220
1
vote
4
replies
822
views
problem with SNPs and Indels detectiong useng WGS data
WGS
updated 22 months ago by 37k • written 22 months ago by ▴ 220
1
vote
2
replies
373
views
low alignment rate of methyl-seq data
alignment
24 months ago by Sara ▴ 220
0
votes
0
replies
385
views
methylseq data analysis using bismark and low alignment rate
next-gen
2.1 years ago by Sara ▴ 220
4
votes
6
replies
1.4k
views
UMI and the reason of high duplicate rate
rna-seq
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 220
1
vote
1
reply
574
views
compare expression for 1 gene between more than 2 samples
RNA-Seq
updated 2.3 years ago by • 0 • written 2.4 years ago by ▴ 220
5
votes
2
replies
3.8k
views
CIBERSORT input file format
RNA-Seq CIBERSORT
updated 2.4 years ago by ▴ 30 • written 2.8 years ago by ▴ 220
2
votes
2
replies
794
views
correct order for pathway analysis
gene
2.4 years ago by Sara ▴ 220
1
vote
1
reply
1.1k
views
a lot of missing variants when using DRAGEN for variant calling
next-gen
2.4 years ago by Sara ▴ 220
0
votes
1
reply
1.4k
views
comparing 2 VCF files
SNP
2.4 years ago by Sara ▴ 220
0
votes
2
replies
644
views
building container in singularity
software error
2.5 years ago by Sara ▴ 220
2
votes
4
replies
1.5k
views
VCF evaluation using RTG.jar vcfeval
SNP
updated 2.5 years ago by ★ 1.6k • written 2.6 years ago by ▴ 220
1
vote
2
replies
584
views
missing file in rtg-tools
SNP
2.6 years ago by Sara ▴ 220
0
votes
2
replies
1.2k
views
difference between DRAGEN and GATK
genome
2.6 years ago by Sara ▴ 220
1
vote
4
replies
667
views
how can I find the download link for a famous dataset
sequencing
2.6 years ago by Sara ▴ 220
0
votes
2
replies
564
views
identifying the command for creating VCF file
SNP
updated 2.6 years ago by ★ 3.1k • written 2.6 years ago by ▴ 220
1
vote
0
replies
413
views
evaluate the quality of VCF files for CNVs
sequencing genome
updated 2.6 years ago by 152k • written 2.6 years ago by ▴ 220
0
votes
3
replies
1.9k
views
read count normalization for spike
RNA-Seq
updated 2.7 years ago by 20 • written 5.9 years ago by ▴ 220
1
vote
1
reply
1.1k
views
correct order of cut off and normalization in RNAseq data
RNA-Seq
updated 2.7 years ago by 68k • written 2.7 years ago by ▴ 220
0
votes
2
replies
387
views
legal issues about running the analysis on the cloud
next-gen
updated 2.9 years ago by 102k • written 2.9 years ago by ▴ 220
0
votes
2
replies
785
views
tool for the new protocol of WES for CNV detection
next-gen
updated 2.9 years ago by ★ 2.9k • written 2.9 years ago by ▴ 220
3
votes
2
replies
542
views
uploading the files to the cloud
RNA-Seq
updated 2.9 years ago by 34k • written 2.9 years ago by ▴ 220
0
votes
5
replies
521
views
location of integrated vector in the genome in CRISPR experiment
genome
updated 3.0 years ago by 14k • written 3.0 years ago by ▴ 220
87 results • Page 1 of 2
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