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1
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1
reply
290
views
getting error when transfer labels for my scRNAseq data using FindTransferAnchors
scRNAseq
8 weeks ago by Sara ▴ 240
1
vote
1
reply
249
views
biological replicate in STAR command
RNAseq
updated 9 weeks ago by 14k • written 9 weeks ago by ▴ 240
1
vote
1
reply
226
views
filtering gene sets when performing scRNAseq data analysis
scRNA-seq
updated 3 months ago by 43k • written 3 months ago by ▴ 240
2
votes
5
replies
545
views
batch effect correction in 10x genomics single cell sequencing
scRNA-seq
updated 3 months ago by • 0 • written 3 months ago by ▴ 240
2
votes
1
reply
634
views
Condition specific marker detection and problem with the distribution of cells from different samples
scRNAseq
4 months ago by Sara ▴ 240
0
votes
3
replies
479
views
labelling the clusters from the CD4 T cell scRNAseq data
scRNAseq
5 months ago by Sara ▴ 240
0
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2
replies
469
views
how to fix low RNA input in bulk RNAseq data analysis?
RNAseq
updated 5 months ago by 82k • written 5 months ago by ▴ 240
4
votes
2
replies
1.6k
views
keep getting error while trying to convert Seurat object into a H5ad file
scRNA-seq Seurat
updated 3 months ago by 43k • written 5 months ago by ▴ 240
0
votes
1
reply
647
views
convert matrix files from 10X (single cell) to h5 file
scRNA-seq
updated 5 months ago by ★ 2.4k • written 5 months ago by ▴ 240
2
votes
1
reply
371
views
zero counts for all genes in RNAseq data of Ferret
RNA-seq DGE
updated 5 months ago by 43k • written 6 months ago by ▴ 240
0
votes
3
replies
469
views
Correct for different number of cells and individuals in single cell data analysis
scRNA-seq
updated 6 months ago by 43k • written 6 months ago by ▴ 240
0
votes
1
reply
748
views
Add samples IDs to Seurat object when integrating different samples to do differential expression analysis
scRNA-seq Seurat
updated 7 months ago by 43k • written 7 months ago by ▴ 240
0
votes
2
replies
1.1k
views
differential gene expression analysis comparing different conditions using scRNAseq
scRNAseq
updated 7 months ago by ▴ 100 • written 7 months ago by ▴ 240
5
votes
9
replies
1.2k
views
losing many genes while doing DGE on the RNAseq data due to read count threshold
DGE RNAseq
updated 9 months ago by 19k • written 9 months ago by ▴ 240
0
votes
1
reply
501
views
including incomplete data set in the PCA & gene expression analysis
RNA-seq
updated 10 months ago by 4.2k • written 10 months ago by ▴ 240
0
votes
1
reply
514
views
demultiplex bcl files from 10X genomics and generate fastq file for each sample separately
scRNAseq
updated 10 months ago by 142k • written 10 months ago by ▴ 240
2
votes
3
replies
1.2k
views
counts matrix should be numeric, currently it has mode: character when using a csv file in R for DESeq2
DESeq2
updated 11 months ago by 43k • written 11 months ago by ▴ 240
1
vote
1
reply
498
views
making metadata file for differential gene expression analysis
RNAseq
updated 11 months ago by ★ 2.0k • written 11 months ago by ▴ 240
0
votes
2
replies
660
views
modelling time series data from different individuals
modeling
11 months ago by Sara ▴ 240
0
votes
1
reply
755
views
issue with merging single cell data files
scRNAseq
updated 14 months ago by ▴ 150 • written 14 months ago by ▴ 240
1
vote
3
replies
682
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 21 months ago by 161k • written 21 months ago by ▴ 240
0
votes
0
replies
378
views
no read counts per allele while using gatk ASEReadCounter
GATK
23 months ago by Sara ▴ 240
2
votes
4
replies
926
views
Unable to access error while running docker container for GATK
gatk docker
23 months ago by Sara ▴ 240
0
votes
3
replies
1.0k
views
Getting fastq files as the output of bowtie2
bowtie2
updated 23 months ago by 21k • written 23 months ago by ▴ 240
3
votes
7
replies
2.4k
views
downloading human rRNA.fasta
rRNA
updated 4 months ago by • 0 • written 23 months ago by ▴ 240
0
votes
0
replies
389
views
make sashimi plot on the IGV using cram file
sashimi plot
24 months ago by Sara ▴ 240
4
votes
3
replies
2.1k
views
determine sex ratio from the bam file
bam
updated 24 months ago by ▴ 30 • written 2.0 years ago by ▴ 240
4
votes
2
replies
569
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 2.0 years ago by 82k • written 2.0 years ago by ▴ 240
0
votes
2
replies
504
views
download sequencing data from public domain
fastq
updated 2.0 years ago by ▴ 230 • written 2.0 years ago by ▴ 240
1
vote
12
replies
1.2k
views
weird alignment results for RNAseq data
hisat2 star
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 240
2
votes
2
replies
840
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 2.0 years ago by 22k • written 2.0 years ago by ▴ 240
2
votes
2
replies
608
views
monoallelic expression analysis
expression monoallelic analysis
updated 2.0 years ago by ★ 3.0k • written 2.0 years ago by ▴ 240
1
vote
1
reply
393
views
filtering out 0/0 calls from VCF file
VCF
updated 2.1 years ago by 161k • written 2.1 years ago by ▴ 240
4
votes
4
replies
761
views
VCF file comparison and plotting them
vcf
updated 2.1 years ago by 161k • written 2.1 years ago by ▴ 240
0
votes
2
replies
1.5k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 2.3 years ago by 14k • written 2.3 years ago by ▴ 240
1
vote
1
reply
837
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 2.3 years ago by ★ 1.8k • written 2.3 years ago by ▴ 240
3
votes
3
replies
1.1k
views
novel AS events detection from RNA seq
Splicing Alternative
updated 2.3 years ago by ▴ 10 • written 2.3 years ago by ▴ 240
3
votes
4
replies
892
views
correct fastq files for the expression analysis
cram
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 240
0
votes
6
replies
1.4k
views
Problem when generating hg38 genome indexes using STAR
STAR
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 240
3
votes
8
replies
2.1k
views
error when indexing transcroptome using salmon
Transcriptome salmon
updated 2.4 years ago by 6.5k • written 2.4 years ago by ▴ 240
0
votes
0
replies
384
views
detect the alternative contigs from the RNAseq data
alternative contigs
2.5 years ago by Sara ▴ 240
0
votes
4
replies
1.2k
views
obtaining unique identifier for a sample from fastq files
fastq
2.6 years ago by Sara ▴ 240
1
vote
1
reply
589
views
extract specific information from fastq and sam files
sequencing
updated 2.6 years ago by 142k • written 2.6 years ago by ▴ 240
4
votes
2
replies
995
views
DNA to peptide translation and adding to csv file
translation
updated 2.6 years ago by 161k • written 2.6 years ago by ▴ 240
3
votes
3
replies
700
views
best tool for the pipeline wrapper
pipeline
updated 2.7 years ago by 100k • written 2.7 years ago by ▴ 240
2
votes
5
replies
2.4k
views
collapsing pacbio reads into a single sequence
pacbio
2.8 years ago by Sara ▴ 240
2
votes
2
replies
910
views
Available annotation file for the PacBio Iso-seq data
sequencing
updated 2.9 years ago by 142k • written 4.3 years ago by ▴ 240
3
votes
3
replies
1.2k
views
quick way of contamination identification from fastq file
alignment
updated 2.9 years ago by ★ 1.4k • written 2.9 years ago by ▴ 240
1
vote
4
replies
1.2k
views
problem with SNPs and Indels detectiong useng WGS data
WGS
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 240
1
vote
2
replies
565
views
low alignment rate of methyl-seq data
alignment
3.2 years ago by Sara ▴ 240
107 results • Page 1 of 3
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