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questions
0
votes
0
replies
120
views
AttributeError: module 'scvelo' has no attribute 'pp
loomfile
scvelo
scipy
annData
numpy
10 days ago by
Kash
▴ 110
0
votes
3
replies
762
views
Visualize coverage across exons with varying lengths
Exons
python
readdepth
binning
updated 20 months ago by
Friederike
8.9k • written 20 months ago by
Kash
▴ 110
0
votes
1
reply
529
views
How do I search for miRNA target seeds using command line mirtarbase?
mirTarBase
miRNAseeds
updated 2.1 years ago by
Buffo
★ 2.4k • written 2.1 years ago by
Kash
▴ 110
3
votes
1
reply
591
views
MrBayes default evolutionary model
mrbayes
evolutionary
model
updated 2.5 years ago by
Mensur Dlakic
★ 27k • written 2.5 years ago by
Kash
▴ 110
4
votes
2
replies
3.2k
views
How to calculate the number of SNPs in each sample in a multi vcf file
vcf
gatk
multi
SNP
2.6 years ago by
Kash
▴ 110
0
votes
1
reply
856
views
How to extract regions from abed file based on variants in vcf file
vcf
bed
vcftools
updated 3.0 years ago by
Alex Reynolds
35k • written 3.0 years ago by
Kash
▴ 110
9
votes
11
replies
2.6k
views
How to filter a vcf file based on genotype of first two samples
vcf
genotype
filter
updated 3.0 years ago by
Jorge Amigo
14k • written 3.0 years ago by
Kash
▴ 110
1
vote
1
reply
1.1k
views
Understanding blast2go annotation result
combinedGOgraph
annotation
blast2go
updated 3.1 years ago by
Istvan Albert
100k • written 3.1 years ago by
Kash
▴ 110
0
votes
0
replies
738
views
Difference between Go terms from blast hits and Interproscan in Blast2go
blast2go
GO terms
Interproscan
Go graph
3.1 years ago by
Kash
▴ 110
0
votes
0
replies
685
views
How to visualize sequence annotation results from Trinotate
Trinotate
3.2 years ago by
Kash
▴ 110
0
votes
0
replies
571
views
What does prot_id and prot_coords represent in Trinotate output
Trinotate
prot_id
prot_coords
3.2 years ago by
Kash
▴ 110
2
votes
3
replies
1.4k
views
How many nr file in NCBI nr database
nr database
3.2 years ago by
Kash
▴ 110
0
votes
0
replies
1.1k
views
Number of reads in the downloaded fastq file
SRA
read count
fasterq-dump
vdb-dump --info
3.5 years ago by
Kash
▴ 110
2
votes
3
replies
861
views
Does bedtools intersect output overlaps with isoforms?
bedtools
isoforms
updated 3.6 years ago by
Kevin Blighe
87k • written 3.6 years ago by
Kash
▴ 110
0
votes
1
reply
1.2k
views
expected heterozygosity, observed heterozygosity and excesshet key in vcf format
excesshet
heterozygosity
vcf
3.7 years ago by
Kash
▴ 110
0
votes
1
reply
1.5k
views
Error while running gatk CombineGVCFs
gatk
CombineGVCF
USER ERROR
updated 3.8 years ago by
Pierre Lindenbaum
161k • written 3.8 years ago by
Kash
▴ 110
1
vote
1
reply
676
views
Assemble A1 and A2 reads using Trinity before running blastx on them
Assembly
Trinity
blastx
3.9 years ago by
Kash
▴ 110
0
votes
2
replies
957
views
Extracting Allele Frequencies at a set of given positions
Allele Frequnecy
VCF
Whole genome
DNA sequence
4.4 years ago by
Kash
▴ 110
0
votes
0
replies
1.2k
views
Hard filtering vcf files
SNP
genome
variant calling
hard filtering
GATK
4.4 years ago by
Kash
▴ 110
1
vote
4
replies
3.6k
views
What is ExcessHet key in the INFO field of a vcf file
SNP
next-gen
sequencing
updated 4.6 years ago by
Dave Carlson
★ 1.7k • written 4.6 years ago by
Kash
▴ 110
4
votes
5
replies
988
views
How to define output for ALT tag in vcf file
SNP
next-gen
sequencing
updated 4.7 years ago by
GenoMax
142k • written 4.7 years ago by
Kash
▴ 110
1
vote
4
replies
1.4k
views
How to use a single file as the input to MaSuRCA
Assembly
MaSuRCA
input
updated 5.2 years ago by
shelkmike
★ 1.2k • written 5.2 years ago by
Kash
▴ 110
0
votes
0
replies
935
views
How to understand data in custom track of ucsc genome browsers
genome
sequence
UCSC genome browser
custom track
5.2 years ago by
Kash
▴ 110
0
votes
2
replies
4.3k
views
Relationship Between The Accuracy Of A Phylogenetic Tree And The Length Of The Sequences Used For Analysis
updated 5.7 years ago by
Biostar
20 • written 10.3 years ago by
Kash
▴ 110
3
votes
7
replies
14k
views
Samtools give this error
Samtools
7.8 years ago by
Kash
▴ 110
0
votes
4
replies
3.5k
views
Why 3' End Has A Lower Quality In Ngs Data
ngs
updated 10.3 years ago by
Ashutosh Pandey
12k • written 10.3 years ago by
Kash
▴ 110
5
votes
1
reply
23k
views
Understanding Fastqc Output- Please Help
fastqc
updated 10.3 years ago by
Varun Gupta
★ 1.3k • written 10.3 years ago by
Kash
▴ 110
0
votes
1
reply
5.3k
views
Which Tree Is Better In Mega Output
10.3 years ago by
Kash
▴ 110
0
votes
3
replies
4.7k
views
What Is The Best Way To Get Rid Of Low Quality Bases In A Sequence
fastx
trimming
updated 10.3 years ago by
rob234king
▴ 610 • written 10.3 years ago by
Kash
▴ 110
1
vote
1
reply
2.5k
views
Neighbor Joining Trees Using Stacks Output - Phylip File
updated 10.3 years ago by
Devon Ryan
104k • written 10.3 years ago by
Kash
▴ 110
2
votes
2
replies
3.1k
views
Tools To Draw Bayesian Trees
bayesian-tree
updated 10 months ago by
Ram
43k • written 10.4 years ago by
Kash
▴ 110
5
votes
3
replies
6.5k
views
How To Check The Reliability Of A Phylogenetic Tree
statistics
updated 10.4 years ago by
DG
7.3k • written 10.4 years ago by
Kash
▴ 110
1
vote
2
replies
2.6k
views
What Are Double Digest Rad Data? How Are They Generated?
updated 10.5 years ago by
Istvan Albert
100k • written 10.5 years ago by
Kash
▴ 110
9
votes
6
replies
17k
views
How To Install Fastx-Toolkit
fastx
10.5 years ago by
Kash
▴ 110
1
vote
2
replies
4.1k
views
How To Edit A Phylip File To Align In Mega
updated 10.5 years ago by
Whetting
★ 1.6k • written 10.5 years ago by
Kash
▴ 110
3
votes
1
reply
3.6k
views
Tools Used For Inferring Phylogenetic Relationships Using Next Generation Data Set
ngs
updated 10 months ago by
Ram
43k • written 10.7 years ago by
Kash
▴ 110
5
votes
5
replies
5.7k
views
Gbs And Rad Data
updated 10.8 years ago by
gammyknee
▴ 210 • written 10.8 years ago by
Kash
▴ 110
7
votes
4
replies
4.6k
views
Converting .Bcl To Fasta
fasta
updated 9 months ago by
Ram
43k • written 10.8 years ago by
Kash
▴ 110
5
votes
4
replies
3.6k
views
Bioinformatics Tools For Rad-Seq Data
RAD-seq
updated 14 months ago by
Ram
43k • written 10.8 years ago by
Kash
▴ 110
39 results • Page
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