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917 results • Page
4 of 19
Sort: Views
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Views
Votes
Replies
0
votes
7
replies
1.9k
views
Batch effect correction in RNASeq data and plot Dendrograms cluster
clustering
dendrogram
RNA-Seq
batch-effect
updated 22 days ago by
Ram
43k • written 4.0 years ago by
Ankit
▴ 500
2
votes
0
replies
1.9k
views
ComBat-seq adjustment of batch effects
RNA-Seq
ComBat-seq
SVA
edgeR
batch-effect
updated 24 days ago by
Ram
43k • written 3.5 years ago by
chatterjee.arumoy
▴ 50
0
votes
0
replies
1.8k
views
How to get Gene Co-expression Network from RNA seq data using cor() function?
RNA-Seq
gene-expression-matrix
correlation
R
updated 24 days ago by
Ram
43k • written 6.3 years ago by
aiswaryabioinfo
▴ 30
4
votes
2
replies
1.8k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 24 days ago by
Dr.Animo
▴ 130 • written 12 months ago by
BioinfoBee
• 0
2
votes
2
replies
1.8k
views
Time point microarray data correcting for batch effects
microarray
combat
batch-effect
updated 22 days ago by
Ram
43k • written 6.7 years ago by
tleona3
▴ 10
0
votes
3
replies
1.8k
views
How to remove batch effect in copy number segment mean
Combat
CNA
Batch-Effect
updated 23 days ago by
Ram
43k • written 5.5 years ago by
sugus
▴ 150
1
vote
2
replies
1.8k
views
Data processing order: normalisation or batch effect correction first?
limma
proteome
batch-effect
R
updated 24 days ago by
Ram
43k • written 3.5 years ago by
Sebastian Hesse
▴ 340
0
votes
4
replies
1.8k
views
Correcting batch effect in unevenly distributed groups
RNA-Seq
batch-effect
R
updated 23 days ago by
Ram
43k • written 4.8 years ago by
jperezboza
▴ 20
0
votes
1
reply
1.8k
views
Advice required for remove batch effect which perfectly collinear with contrast of interest
RNA-seq
batch-effect
updated 22 days ago by
Ram
43k • written 6.7 years ago by
boymin2020
▴ 80
6
votes
6
replies
1.8k
views
agilent human all exon sureselct v7 bed file
exon
human
bed
v7
agilent
all
sureselect
updated 5 days ago by
MiladAD
▴ 10 • written 24 months ago by
soheil
• 0
3
votes
5
replies
1.8k
views
Limma/edgeR Design matrix for gender effect
RNA-Seq
batch-effect
updated 24 days ago by
Ram
43k • written 4.7 years ago by
kailsen
• 0
5
votes
2
replies
1.8k
views
Batch effects from sequencing samples accross multiple flow cells.
rna-seq
batch
batch-effect
sequencing
updated 24 days ago by
Ram
43k • written 3.0 years ago by
Mat
▴ 60
1
vote
0
replies
1.8k
views
Using SVA with RRBS data
sva
batch-effect
RRBS
updated 24 days ago by
Ram
43k • written 7.2 years ago by
mrodrigues.fernanda
▴ 50
2
votes
2
replies
1.8k
views
Parametric or non-parametric tests for qPCR significance testing between treatments?
qPCR
statistical test
parametric
non-parametric
updated 7 days ago by
e.r.zakiev
▴ 210 • written 3.8 years ago by
n.anuragsharma
▴ 40
0
votes
0
replies
1.8k
views
Differential expression using Scran batch corrected data
single-cell
Batch-effect
RNA-Seq
Scran
updated 22 days ago by
Ram
43k • written 5.5 years ago by
baldissera152
▴ 10
5
votes
13
replies
1.8k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 20 days ago by
ATpoint
82k • written 21 days ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
1.8k
views
Accounting for hidden batch effects in differential expression analysis with DEXseq and Slueth
Batch-effect
RNA-Seq
Differential-Expression
updated 24 days ago by
Ram
43k • written 7.2 years ago by
vakul.mohanty
▴ 270
1
vote
2
replies
1.7k
views
Batch effects and MDSPlot in limma
limma
Batch-effect
MDS
Galaxy
updated 24 days ago by
Ram
43k • written 4.8 years ago by
sonayuv
• 0
1
vote
1
reply
1.7k
views
sea corrected expression matrix
sva
microarrays
batch-effect
updated 24 days ago by
Ram
43k • written 6.8 years ago by
ATCG
▴ 380
2
votes
2
replies
1.7k
views
Remove batch effect for many RNA-seq
ComBat
RNA-Seq
batch-effect
sva
updated 23 days ago by
Ram
43k • written 4.8 years ago by
Shaway
• 0
7
votes
7
replies
1.7k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 25 days ago by
Dunois
★ 2.5k • written 26 days ago by
AdviceSeeker
• 0
6
votes
10
replies
1.7k
views
Integration of Microarray datasets with different platforms and biological groups
limma
microarray
DEA
batch-effect
updated 23 days ago by
Ram
43k • written 4.7 years ago by
asalimih
▴ 60
1
vote
4
replies
1.7k
views
Batch correction and DE analysis of miRNA Seq data
miRNAseq
Differential-Expression
batch-effect
updated 22 days ago by
Ram
43k • written 5.1 years ago by
georgians
▴ 50
0
votes
0
replies
1.7k
views
Batch effect and CCA
CCA
RNA-Seq
seurat
batch-effect
updated 23 days ago by
Ram
43k • written 5.1 years ago by
akivab2
▴ 110
2
votes
2
replies
1.7k
views
How to add a title to a cnetplot?
r
cnetplot
updated 24 days ago by
Ram
43k • written 3.5 years ago by
appropiate
▴ 80
4
votes
15
replies
1.6k
views
how to test for differential expression in samples where a global increase in gene expression is expected
edgeR
DESeq
Differential-Expression
RNA-Seq
updated 7 days ago by
Gordon Smyth
★ 7.1k • written 4 months ago by
raplayer
▴ 10
0
votes
1
reply
1.6k
views
RRBS data analysis using RnBeads give Scan() error
RRBS
450k
RnBeads
updated 24 days ago by
Ram
43k • written 6.8 years ago by
rahel14350
▴ 40
2
votes
2
replies
1.6k
views
Combining control samples from 2 separate studies. Model matrix for batch effect?
gene-expression
R
limma
batch-effect
model-matrix
updated 22 days ago by
Ram
43k • written 7.3 years ago by
tolgaturant
▴ 20
1
vote
6
replies
1.6k
views
How can Differentially Expressed Genes be found by limma package after removing batch effect by ComBat function in sva package?
limma
sva
batch-effect
R
updated 25 days ago by
Ram
43k • written 3.9 years ago by
amirmehrgou
▴ 10
0
votes
1
reply
1.6k
views
Public RNA-Seq and Microarray samples from same tissue
Microarray
RNA-Seq
Batch-Effect
updated 24 days ago by
Ram
43k • written 7.9 years ago by
Ar
★ 1.1k
1
vote
2
replies
1.6k
views
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
CellCycleScoring
SCTransform
Seurat
updated 2 days ago by
Li
• 0 • written 2.3 years ago by
GPM
▴ 10
6
votes
7
replies
1.6k
views
How to assess RNA-Seq batch correction success?
Combat
RNA-Seq
Limma
DESeq2
batch-effect
updated 22 days ago by
Ram
43k • written 5.0 years ago by
borkk
▴ 140
0
votes
1
reply
1.6k
views
Extraction of batch subject sequence from Blast result.
minus-strand
blastdbcmd
updated 24 days ago by
Ram
43k • written 5.9 years ago by
kabir.deb
▴ 80
1
vote
5
replies
1.6k
views
How to correct unknown Batch effect?
PCA
gene-expression
DESeq2
RNA-seq
batch-effect
updated 24 days ago by
Ram
43k • written 12 months ago by
luffy
▴ 110
4
votes
10
replies
1.6k
views
Do I have batch effect?
RNA-Seq
edgeR
batch-effect
updated 25 days ago by
Ram
43k • written 3.9 years ago by
avino
▴ 20
6
votes
4
replies
1.5k
views
RNA-Seq: X samples and X batches
RNA-Seq
edgeR
DESeq2
Batch-Effect
updated 24 days ago by
Ram
43k • written 5.3 years ago by
Behram Radmanesh
▴ 40
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 2 days ago by
Emanoelle
• 0 • written 5.7 years ago by
Elizabeth
▴ 30
0
votes
0
replies
1.5k
views
RIPSeeker viewRIP function fails to extract values() in GRangesList/S4 object
RIPSeq
S4
RIP
R
updated 24 days ago by
Ram
43k • written 6.2 years ago by
CrisMar
▴ 80
0
votes
0
replies
1.5k
views
minifi for RRBS
rrbs
batch-effect
methylation
updated 24 days ago by
Ram
43k • written 7.2 years ago by
German.M.Demidov
★ 2.9k
6
votes
2
replies
1.5k
views
Writing a batch script for analyzing RNA-Seq data
RNA-Seq
quantification
alignment
updated 24 days ago by
Ram
43k • written 5.2 years ago by
mohammedtoufiq91
▴ 250
2
votes
3
replies
1.5k
views
RNASeq - How to compare the expression of a single gene across batches
RNA-Seq
edgeR
batch-effect
updated 22 days ago by
Ram
43k • written 3.6 years ago by
oakhamwolf
▴ 20
4
votes
6
replies
1.5k
views
CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRleFromGR(x, weight = weight, ignore.strand = ignore.strand): Seqlength…
gff3
GenomicRanges
ORFik
GenomicFeatures
updated 25 days ago by
GenoMax
142k • written 15 months ago by
Estefania
▴ 30
0
votes
1
reply
1.5k
views
Assembled genome a little larger than Kmergeneie prediction?
kmergenie
genome-size
updated 24 days ago by
Ram
43k • written 8.1 years ago by
gerrychang1985
▴ 40
2
votes
4
replies
1.4k
views
How to fix Error in dat[, batch == batch_level] : (subscript) logical subscript too long when removing batch effects
microarray
combat
batch-effect
median-normalization
updated 22 days ago by
Ram
43k • written 18 months ago by
Dominique
• 0
0
votes
0
replies
1.4k
views
Help with Circos plot "Assumption Error" that prevents plotting a protein interactions network
CircosPlot
updated 24 days ago by
Ram
43k • written 3.4 years ago by
hniels01
• 0
1
vote
4
replies
1.4k
views
Removing/Accounting for batch effects in unbalanced group RNAseq data
rna-seq
batch-effect
deseq
updated 22 days ago by
Ram
43k • written 2.3 years ago by
claysandel
• 0
7
votes
4
replies
1.4k
views
Is there any journal article to reference removeBatchEffect function from Limma?
batch
removebatcheffect
limma
rna-seq
batch-effect
updated 24 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
1
vote
2
replies
1.4k
views
How to download a list pdb codes contained in a csv file using
Biopython
updated 24 days ago by
Ram
43k • written 3.2 years ago by
jmungar2
▴ 10
0
votes
2
replies
1.4k
views
Interpretation problem at PCA plot for detecting batch effect
PCA
RNA-Seq
batch-effect
updated 23 days ago by
Ram
43k • written 4.4 years ago by
modarzi
▴ 170
3
votes
8
replies
1.3k
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 21 days ago by
swbarnes2
14k • written 9 months ago by
bp22
▴ 80
917 results • Page
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> hits from BLAST hits sequences
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Is this ALL the context you can give us?
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Where did you copy-paste this from? It looks like an assignment question.
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